View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20407_high_4 (Length: 282)
Name: NF20407_high_4
Description: NF20407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20407_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 42324077 - 42323826
Alignment:
| Q |
1 |
cattatggatttgattcaagtaggggaaccgaacggaacgtggaagagtaacaatgtgaaagtaagattgaaagttaaccataagaaattgaaaacagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42324077 |
cattatggatttgattcaagtaggagaaccgaactgtacgtg----agtaacaatgtgaaagtaagattgaaagttaaccataagaaattgaaaacagtg |
42323982 |
T |
|
| Q |
101 |
ggatataaaattagtcatcttatattaatctaagtgttaaagtcacatttatatgccaatttcctgagaggtcccttgattgaaagataattacttcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42323981 |
ggatataaaattagtcatcttatattaatctaagtgttaaaatcacaattatatgccaatttcctgagaggtcccttggttgaaagataattacttcaaa |
42323882 |
T |
|
| Q |
201 |
ctcgtaaaacttgattcgagacttggaaatgtgaagaagctttgattaaatatgtc |
256 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42323881 |
ctcgtgaaacttgattcgagacttggcaatgtgaagaagctttgattaaatatgtc |
42323826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 27235862 - 27235812
Alignment:
| Q |
161 |
ttcctgagaggtcccttgattgaaagataattacttcaaactcgtaaaact |
211 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
27235862 |
ttcctgagaggtcacttggttgaaagataaatacttcaacctcgtgaaact |
27235812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University