View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20407_low_5 (Length: 254)
Name: NF20407_low_5
Description: NF20407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20407_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 23110627 - 23110390
Alignment:
| Q |
16 |
gagagcattgcgatgttgacgacaagaacgtcaattttggaagggcaaatccctgaccttgatagaagttttgcaatgctgtcgtcaaaaaattcttcca |
115 |
Q |
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| T |
23110627 |
gagagcattgcgatgttgacgacaagaacatcaatttcggaagggcaaatccctgaccttgatagaagttttgcaatgctgtcgtcaaaaaattcttcca |
23110528 |
T |
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| Q |
116 |
tctctgagatcccgtctttcaatgttggggatgcttcgcggccttcaaagacgtttcttggggcgtaagtttgttcgccaataccacaacttacaatagc |
215 |
Q |
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| T |
23110527 |
tctctgagatcccgtctttcaatgttggggatgcttcgcggccttcaaagacgtttcttggggcgtaagtttgttcgccaataccacaacttacaatagc |
23110428 |
T |
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| Q |
216 |
tttgaggagaaatttgtactcatctagacccaaatttt |
253 |
Q |
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| T |
23110427 |
tttgaggagaaatttgtactcatttagacccaaatttt |
23110390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 23073736 - 23073972
Alignment:
| Q |
18 |
gagcattgcgatgttgacgacaagaacgtcaattttggaagggcaaatccctgaccttgatagaagttttgcaatgctgtcgtcaaaaaattcttccatc |
117 |
Q |
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| T |
23073736 |
gagcattgagatgttgacgacaagaatgtcgatttcggaaggggaaatcgctgatctagctaggagtttcgcaatgctgtcgttgaaaaactcttccatc |
23073835 |
T |
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| Q |
118 |
tctgagatcccgtctttcaatgttggggatgcttcgcggccttcaaagacgtttcttggggcgtaagtttgttcgccaataccacaacttacaatagctt |
217 |
Q |
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| T |
23073836 |
tcagagatcccgtcgttcagtgttggtgatgattcgcggccttcaaagacatttcttggtgcgtaagtttgttcgccaattccggaacttacaacggctt |
23073935 |
T |
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| Q |
218 |
tgaggagaaatttgtactcatctagacccaaattttt |
254 |
Q |
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| T |
23073936 |
tgaggagaaatttgtactcatctagacccaaattttt |
23073972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 23078347 - 23078579
Alignment:
| Q |
21 |
cattgcgatgttgacgacaagaacgtcaattttggaagggcaaatccctgaccttgatagaagttttgcaatgctgtcgtcaaaaaattcttccatctct |
120 |
Q |
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| T |
23078347 |
cattgagatgttgacaacaagaacatcgatttcggaaggggaagtagctgatcttgcaaggagttttgcaatgctgtcgtcgaaaaactcttccatctct |
23078446 |
T |
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| Q |
121 |
gagatcccgtctttcaatgttggggatgcttcgcggccttcaaagacgtttcttggggcgtaagtttgttcgccaataccacaacttacaatagctttga |
220 |
Q |
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| T |
23078447 |
gagatcccgtcgttcagcgttggtgatgcttcgcggccttcaatgacatttcttggggcgtaagtttgttcgccaatgccgcaacttacaatggatttga |
23078546 |
T |
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| Q |
221 |
ggagaaatttgtactcatctagacccaaatttt |
253 |
Q |
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| T |
23078547 |
gcagaaacttgtactcatttagacccaaatttt |
23078579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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