View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_13 (Length: 425)
Name: NF20408_high_13
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 33710772 - 33711188
Alignment:
| Q |
1 |
acaagaacttaaataaataaactcttgaataaaaatgaatcacaaattgttccgtgagcttaagtcagtttatatgaacattgtattttatatacaacgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||| ||||||||| ||||| ||||||||||||||||| |
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| T |
33710772 |
acaagaacttaaataaataaactcttgaataaaaatgaaccacaaattatcccgtgaatttaagtcggtttatatggacattatattttatatacaacgg |
33710871 |
T |
|
| Q |
101 |
acaagttattgattcactttaagacaatgaaattctagttaccgaacaacttaac--nnnnnnngtgaactacaaacaatagctaaaatgtagaacgtta |
198 |
Q |
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| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
33710872 |
ataagttattgattcactttaagacaatataattctagttaccgaacaacttaacaaaaaaaaagtgaactacaaacaatagataaaatgtagaacgtta |
33710971 |
T |
|
| Q |
199 |
tatacatattcctcacaaatgccatttacaacatatccaaagaaggtgaaattgttgccatctgttcattaccattcaccaacccccttcttcttcttc- |
297 |
Q |
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|| |||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33710972 |
tacacatattcctcacaaatgccatttacaacatatccacagaagaagacattgttgtcatctgttcattaccattcaccaacccccttcttcttcttct |
33711071 |
T |
|
| Q |
298 |
-----nnnnnnnnnnnnaacttgcaccaaccgaaaatccaattcaactgaaaattatattttttaaactcaaacctaatgatcaaactatgagaaaccat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33711072 |
tttttttttttttttttaacttgcaccaaccgaaaatccaattcaactgaaaattatattttttaaactcaaacctaatgatcaaactatgagaaaccat |
33711171 |
T |
|
| Q |
393 |
taagtctaaagcctttg |
409 |
Q |
| |
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||||||||||||||||| |
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| T |
33711172 |
taagtctaaagcctttg |
33711188 |
T |
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