View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_14 (Length: 425)
Name: NF20408_high_14
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 32644463 - 32644070
Alignment:
| Q |
17 |
ttgtatgtagcaataacggtttaactagtcagtgacttcttgttggtccataatcattggagaaaatgtcacaattgcatgtaggaagtacaatgaatgt |
116 |
Q |
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| T |
32644463 |
ttgtatgtagcaataacggtttaactagtcaatgacttcttgttggtccataatcattggagaaaatgtcacaattgcatgtaggaagtacaatgaatgt |
32644364 |
T |
|
| Q |
117 |
agagcatttggctctaatcaaatcagaatgtgcctagagattttgagcctacggaaatttgtcatgcattgtaattactacgtacttgtattgagcatat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32644363 |
agagcatttggctctaatcaaatcagaatgtgcctagagattttgagcctacggaaatttgtcatacattgtaattactacgtacttgtattgagcatat |
32644264 |
T |
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| Q |
217 |
atacaagtaggggcaagttgagtttgtaatctatgtaaataatgcagtgaggatttatatgcatgtttatgctctttgatacgcatgtgataaatacaaa |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32644263 |
atacaagtaggggcaagttgagtttgtaacctatgtaaataatgcagtgaggatttatatgcatgtttatgctctttgatacgcatgtgataaatacaaa |
32644164 |
T |
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| Q |
317 |
aaatgaattttgtaacatgaactctatgtttggtacgaaaggaaaatattggagagtgatctatgaattgttatttttgtacttaagtaggaat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32644163 |
aaatgaattttgtaacatgaactctatgtttggtacgaaaggaaaatattggagagtgatctatgaattgttatttttgtacttaagtaggaat |
32644070 |
T |
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