View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_16 (Length: 421)
Name: NF20408_high_16
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 355
Target Start/End: Complemental strand, 1540232 - 1539890
Alignment:
| Q |
13 |
gagaagaataagcaactcattttgagattagttgagaaaatactttaaagtggtcacactcacacaatgtcacattgttgttaacatattcataaacaaa |
112 |
Q |
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| T |
1540232 |
gagaaaaataagcaactcattttgagaagagttgagaaaatactttaaagtggtcacactcacacaatgtcacattgttgttaacatattcataaacaaa |
1540133 |
T |
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| Q |
113 |
taacatgtgtctgcttctttttgtttatttcagatgtgaaagaatacaatttcttttatttgttttaataataagaaccttctgtttgaagcaagcatat |
212 |
Q |
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| T |
1540132 |
taacacgtgtctgcttctttttgtttatttcagatgtgaaagaatacaatttcttatattttttttaataataagaaccttctgtttgaagcaagcatat |
1540033 |
T |
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| Q |
213 |
atgtctcataatcaaactataacacaaaacacaagcaaagttctccaaagctaatattctcggtggtggtgcttcagataattttgaattttgtggaagg |
312 |
Q |
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| T |
1540032 |
atgtctcataatcaaactataacacaaaacacaagcaaagttctccaaagctaatattctcggtggtggtgcttcagataattttgaattttggggaagg |
1539933 |
T |
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| Q |
313 |
gtgaaaacaaatttaaaaatgtataaatataataaattatttt |
355 |
Q |
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| T |
1539932 |
gtgaaaacaaatttaaaaatgtataaatataatagattatttt |
1539890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 175 - 354
Target Start/End: Original strand, 1598057 - 1598236
Alignment:
| Q |
175 |
ttttaataataagaacctt-ctgtttgaagcaagcatatatgtctcataatcaaactataacacaaaacacaagcaaagttctccaaagctaatattctc |
273 |
Q |
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| T |
1598057 |
ttttaataataagaaactttctgtttgaagcaaccatatatgtctcataatcaaactataagacaaaa-acaagcaaagttctccaaagctaatattctc |
1598155 |
T |
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| Q |
274 |
ggtggtggtgcttcagataattttgaattttgtggaagggtgaaaacaaatttaaaaatgtataaatataataaattattt |
354 |
Q |
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| T |
1598156 |
ggtggtggagcttcacataattttgaatattgtgaaagagtgaaaacaaatttaaaaatgtatgaatataattaactattt |
1598236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 1597858 - 1597998
Alignment:
| Q |
13 |
gagaagaataagcaactcattttgagattagttgagaaaatactttaaagtggtcacactcacacaatgtcacattgttgttaacatattcataaacaaa |
112 |
Q |
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| T |
1597858 |
gagaaaaataagcaactcattttgag-----ttgagaaagcactttaatgtggtcacactcacacaatgtcacattgttgttaaccaattcataaacaac |
1597952 |
T |
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| Q |
113 |
taacatgtgtctgcttctttttgtttatttcagatgtgaaagaata |
158 |
Q |
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| T |
1597953 |
taacatgtgtatgcttctttttgttcatttcagatgtgaatgaata |
1597998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 405
Target Start/End: Complemental strand, 1539781 - 1539729
Alignment:
| Q |
353 |
tttcaagtggaatggaatggagttgatgtgcagtttcaagtgcaggtggatga |
405 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
1539781 |
tttcaagtggaatggagtggaattgatgtgcagtttcaagtgcaggtggatga |
1539729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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