View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_19 (Length: 406)
Name: NF20408_high_19
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 22 - 387
Target Start/End: Original strand, 46217374 - 46217733
Alignment:
| Q |
22 |
ggaccaggctcctaaaccctagatccccggtgacacgcatttatcttacacctttatacatccagctaaataacctaaatcgctacatcaccaccgcaca |
121 |
Q |
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| T |
46217374 |
ggaccaggctcctaaaccctagatccccggtgacacgcatttatcttacacctttatacatccagctaaataacctaaatcgctacatcaccaccgcaca |
46217473 |
T |
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| Q |
122 |
cggtagtaatcgtcgtcgtcggagcctcaccggcgaagcaacctggaaaatcataaacgtaataatcctttccttgattgcacggttacgattatgcgga |
221 |
Q |
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| T |
46217474 |
cggtagtaatcgtcgtcgtcggagcctcaccggcgaagcaacctggaaaatcataaacgtaataatcctttccttgattgcacggttacgattatgcgga |
46217573 |
T |
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| Q |
222 |
atcacgtaacggttagattaataagaaaaatcgattctgttaagctagaattgtaatttgctgttgtttgagcttgcaagttaactgaagatgccactga |
321 |
Q |
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| T |
46217574 |
atcacgtaacggttagattaacaagaaaaatcgattctgttaagctagaattgtaatttgttgttgtttgagcttgcaagttaactgaagatgccactga |
46217673 |
T |
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| Q |
322 |
aaattgaaagaaagaaagagnnnnnnnnnngattatgcagaacgcgattctcgttgtggttagatt |
387 |
Q |
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| T |
46217674 |
aaattgaaagaaaaaaaaa------aaaaagattatgcagaacgcgattctcgttgtggttagatt |
46217733 |
T |
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