View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_22 (Length: 388)
Name: NF20408_high_22
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_22 |
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| [»] scaffold0244 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 2332542 - 2332181
Alignment:
| Q |
17 |
ggaagaaaaagcaacaaacaggcaatcaccatttcccatacatcatgcccaacaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtc |
116 |
Q |
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| T |
2332542 |
ggaagaaaaagcaccaaacaggcagacaccatttcccatacatcatgcccaacaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtc |
2332443 |
T |
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| Q |
117 |
ctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttccatagttacaggcaagagaagctggtccatcaagttaatgctaagagatgg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
2332442 |
ctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttccatagtgacaggcaagagaagctggtccatcaagctaatgccaagagatgg |
2332343 |
T |
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| Q |
217 |
aatattatccagttgtaaactatatgagaggtttacagggatcatttgattggaatagattcataaaaaactttgaggcttcccttttgagagtgcttgc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2332342 |
aatattatccagttgtaaactatatgagaggtttacagggatcatttgattgggatagatgcataaaaaactttgaggcttcccttttgagagtgcttgc |
2332243 |
T |
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| Q |
317 |
attcgtgcaccatatgttttccacattcaaaccagaaattttatttcgtcgtcttctgatgatg |
380 |
Q |
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| T |
2332242 |
attcgtgcacc--atgttttccacattcaaaccagaaattttatttcgccgtcttctgatgatg |
2332181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 1261796 - 1261909
Alignment:
| Q |
43 |
caccatttcccatacatcatgcccaacaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcataggg |
142 |
Q |
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| T |
1261796 |
caccattttccacacatcatccccaacaatatgccaataagttttgaaaaaaataggttgaaaaccatctggacccggggctttgtaagagtgcattgag |
1261895 |
T |
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| Q |
143 |
aaaatagaatcttt |
156 |
Q |
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| T |
1261896 |
aaaatagcatcttt |
1261909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 16491 - 16604
Alignment:
| Q |
43 |
caccatttcccatacatcatgcccaacaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcataggg |
142 |
Q |
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| T |
16491 |
caccattttccagacatcatccccaacactatgccaataagctttgaaaaaaataggttgaaaaccatctggacccggggctttgtaaaagtgcattgag |
16590 |
T |
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| Q |
143 |
aaaatagaatcttt |
156 |
Q |
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||||||| |||||| |
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| T |
16591 |
aaaatagcatcttt |
16604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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