View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_24 (Length: 361)
Name: NF20408_high_24
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 38485081 - 38485416
Alignment:
| Q |
19 |
tgaagcatatgactgtatcaaacacctgtttcgacagattatcagacctgatagtgaagaacattctattgtgactgctatgtttcaagaaattgatcat |
118 |
Q |
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| T |
38485081 |
tgaagcatatgactgtatcaaacacctgtttcgacagattatcagacctgatagtgaagaaaattctattgtgactgctatgtttcaagaagttgatcat |
38485180 |
T |
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| Q |
119 |
tcaattgagattgggaaattcaccaaagtattcaaaactactgcacttccccagctccatagcaagttgataaaacttcttgaattgttaaataatggaa |
218 |
Q |
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| T |
38485181 |
tcaattgagattgggaaattcaccaaagtattcaaaactactgcacttccccagctccatagcaagttgataaaacttcttgaattgttaaataatggaa |
38485280 |
T |
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| Q |
219 |
agaaagattctaaccgattggtggacacccttcaggctctttatgagatttctatccgagattttttcaaggagaaaagggataacgaacggctaaagga |
318 |
Q |
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| T |
38485281 |
agaaagattctaaccgattggtggacacccttcaggctctttatgagatttctatccgagattttttcaaggagaaaagggataacgaacggctaaagga |
38485380 |
T |
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| Q |
319 |
ggatggtttggctccacaagattcagcttcatctca |
354 |
Q |
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| T |
38485381 |
ggatggtttggctccacaagattcagcttcttctca |
38485416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 291
Target Start/End: Original strand, 30119512 - 30119749
Alignment:
| Q |
54 |
agattatcagacctgatagtgaagaacattctattgtgactgctatgtttcaagaaattgatcattcaattgagattgggaaattcaccaaagtattcaa |
153 |
Q |
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| T |
30119512 |
agattatcaaacccaacagtgaagagcattcgattgtgactgttctgtttcaggaaattgatcactctcttgagattgagaaattcactaatacattcaa |
30119611 |
T |
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| Q |
154 |
aactactgcacttccccagctccatagcaagttgataaaacttcttgaattgttaaataatggaaagaaagattctaaccgattggtggacacccttcag |
253 |
Q |
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||| |||||||| |||||||| || |||||||||||||||| | || || || || || ||||||||||| | | ||||| | ||||||||| |
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| T |
30119612 |
aacaactgcactgccccagcttcaccacaagttgataaaacttgtcgagttattgaacaagcctgtcaaagattctaatcaagtggtgaatacccttcag |
30119711 |
T |
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| Q |
254 |
gctctttatgagatttctatccgagattttttcaagga |
291 |
Q |
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| T |
30119712 |
gcgctttatgagattgctatcagagaccttttcaagga |
30119749 |
T |
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