View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_26 (Length: 343)
Name: NF20408_high_26
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 26969997 - 26969674
Alignment:
| Q |
1 |
ttgagcactagcacaattcgtatatttatatatgggaagttgtcacttatatataggttctatactctacaacaaaacttagtaaacaagctcatttcat |
100 |
Q |
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| T |
26969997 |
ttgagcactagcacaattcgtatatttatatatgggaagttgtcacttatatataggttctatactctacaacaaaacttagtaaacaagctcatttcat |
26969898 |
T |
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| Q |
101 |
ttcaatcttatcttactagaaaagaaaaacacaacaaaaactaaagctacattaattcttcttcttcaaatggcatcaaaacaaccaagacacgttgaag |
200 |
Q |
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| T |
26969897 |
ttcaatcttatcttactagaaaagaaacacacaacaaaaactaaagctacattaattcttcttcttcaaatgggatcaaaacaaccaagacacgttgaag |
26969798 |
T |
|
| Q |
201 |
-aaatcagtgtaacaaaagaacaacatgatcaagagaagcccggtgtaattggatcagtgatgaaggctgttcaggacacctacgagaatgcaagagaag |
299 |
Q |
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| T |
26969797 |
aaaatcagt-taacaaaagaacaacatgatcaagagaagcccggtgtaattggttcagtgatgaaggctgttcatgacacctacgagaatgcaagagaag |
26969699 |
T |
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| Q |
300 |
ccgtagttggcaaaagagacccaac |
324 |
Q |
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| T |
26969698 |
ctgtagttggcaaaagggacccaac |
26969674 |
T |
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