View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20408_high_28 (Length: 332)
Name: NF20408_high_28
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 323
Target Start/End: Complemental strand, 35109331 - 35109018
Alignment:
| Q |
10 |
catcatcaaccacataacagctgccttccactaaccatacacacatttcttctcttggttgttttgtgttaaatcactatatatgatgatgcttaaaaca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35109331 |
catcatcaaccacataacagctgccttccactaaccatacacacatttcttctcttggttgttttgtgttaaatcactatatatgatgatgcttaaaaca |
35109232 |
T |
|
| Q |
110 |
nnnnnnnaaggatcatactttgatgatgtttgttttgtaagcttgtcggttgtgtagtctacataagtccttctcaagacaaaaaccataggttttgcca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35109231 |
tttttttaaggatcatactttgatgatgtttgttttgtaagcttgtcggttgtgtagtctacataagtccttctcaagacaaaaaccataggttttgcca |
35109132 |
T |
|
| Q |
210 |
aaccactagtctcatcttccattggtggatcttgtttcctctctaataacacttttgatatataatcctctccaatcacaatgttttacatccttatatc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35109131 |
aaccactagtctcatcttccattggtggatcttgtttcctctctaataacacttttgatatataatcctctccgatcacaatgttttacatccttatatc |
35109032 |
T |
|
| Q |
310 |
ttttgtctcctttg |
323 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35109031 |
ttttgtctcctttg |
35109018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 35068827 - 35068713
Alignment:
| Q |
145 |
tgtaagcttgtcggttgtgtagtctacataagtccttctcaagacaaaaaccataggttttgccaaaccactagtctcatcttccattggtggatcttg- |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35068827 |
tgtaagcttgtcggttgtgtagtctacataagtccttctcaagacaaaaaccattggttttgccaaaccactactctcatcttccattggtggatcttgt |
35068728 |
T |
|
| Q |
244 |
tttcctctctaataa |
258 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
35068727 |
tttcgtctctaataa |
35068713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 35068647 - 35068585
Alignment:
| Q |
261 |
cttttgatatataatcctctccaatcacaatgttttacatccttatatcttttgtctcctttg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35068647 |
cttttgatatataatcctctccaatcacaatgttttacatccttatatcttttgtctcctttg |
35068585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 35069266 - 35069218
Alignment:
| Q |
44 |
ccatacacacatttcttctcttggttgttttgtgttaaatcactatata |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35069266 |
ccatacacacatttcttctcttggttgttttgtgttaaatcactatata |
35069218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University