View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20408_high_3 (Length: 497)

Name: NF20408_high_3
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20408_high_3
NF20408_high_3
[»] chr2 (13 HSPs)
chr2 (20-472)||(44475285-44475740)
chr2 (51-207)||(44485525-44485681)
chr2 (209-261)||(7480854-7480906)
chr2 (209-305)||(4026964-4027056)
chr2 (51-163)||(44471251-44471363)
chr2 (209-261)||(8832536-8832588)
chr2 (209-261)||(23956219-23956271)
chr2 (209-261)||(38216098-38216150)
chr2 (210-261)||(736043-736094)
chr2 (209-260)||(29774825-29774876)
chr2 (209-261)||(887491-887543)
chr2 (209-261)||(11777063-11777115)
chr2 (209-245)||(35235200-35235236)
[»] chr4 (29 HSPs)
chr4 (209-305)||(488339-488431)
chr4 (210-261)||(36254992-36255043)
chr4 (209-297)||(38345777-38345861)
chr4 (209-259)||(8130560-8130610)
chr4 (211-305)||(23335681-23335771)
chr4 (209-261)||(12495599-12495651)
chr4 (209-261)||(17222908-17222960)
chr4 (209-261)||(29877718-29877770)
chr4 (209-260)||(34633470-34633521)
chr4 (209-260)||(43699404-43699455)
chr4 (209-258)||(14987555-14987604)
chr4 (220-261)||(32628857-32628898)
chr4 (209-261)||(11256616-11256668)
chr4 (209-261)||(18424233-18424285)
chr4 (209-261)||(22273859-22273911)
chr4 (209-261)||(23297514-23297566)
chr4 (209-261)||(34526292-34526344)
chr4 (209-261)||(36740983-36741035)
chr4 (209-261)||(48687013-48687065)
chr4 (209-261)||(48721899-48721951)
chr4 (209-260)||(24101895-24101946)
chr4 (214-261)||(29615439-29615486)
chr4 (213-260)||(33534008-33534055)
chr4 (209-305)||(41228942-41229034)
chr4 (212-261)||(15184625-15184674)
chr4 (209-261)||(825761-825813)
chr4 (209-261)||(23284746-23284798)
chr4 (209-261)||(46704225-46704277)
chr4 (209-261)||(48591379-48591431)
[»] chr6 (15 HSPs)
chr6 (209-289)||(32675844-32675920)
chr6 (209-261)||(9202354-9202406)
chr6 (209-246)||(7267876-7267913)
chr6 (209-261)||(2255813-2255865)
chr6 (209-305)||(6758666-6758759)
chr6 (209-248)||(9201676-9201715)
chr6 (209-259)||(2040136-2040186)
chr6 (209-263)||(10755238-10755292)
chr6 (209-261)||(6752891-6752943)
chr6 (209-261)||(10054458-10054510)
chr6 (209-261)||(10874063-10874115)
chr6 (209-261)||(23239326-23239378)
chr6 (209-261)||(32165216-32165268)
chr6 (209-245)||(35071383-35071419)
chr6 (209-261)||(35111305-35111357)
[»] chr7 (16 HSPs)
chr7 (209-261)||(46744032-46744084)
chr7 (209-259)||(43818833-43818883)
chr7 (209-305)||(44613428-44613520)
chr7 (209-259)||(47654369-47654419)
chr7 (209-261)||(33288030-33288082)
chr7 (209-305)||(14691254-14691346)
chr7 (209-248)||(33204926-33204965)
chr7 (209-259)||(22032843-22032893)
chr7 (210-260)||(23356447-23356497)
chr7 (211-261)||(48021605-48021655)
chr7 (209-255)||(49104323-49104369)
chr7 (209-254)||(30181636-30181681)
chr7 (209-258)||(38372640-38372689)
chr7 (209-261)||(1401152-1401204)
chr7 (209-261)||(29378724-29378776)
chr7 (209-261)||(34923012-34923064)
[»] chr5 (33 HSPs)
chr5 (220-305)||(1576669-1576750)
chr5 (220-305)||(1608065-1608146)
chr5 (209-305)||(41419540-41419632)
chr5 (209-259)||(29659141-29659191)
chr5 (209-261)||(1943074-1943126)
chr5 (209-261)||(11912057-11912109)
chr5 (209-261)||(24030293-24030345)
chr5 (209-257)||(28357435-28357483)
chr5 (209-261)||(43268591-43268643)
chr5 (209-305)||(28625519-28625611)
chr5 (211-260)||(42852101-42852150)
chr5 (220-260)||(6150872-6150912)
chr5 (209-261)||(7364264-7364316)
chr5 (209-261)||(11163237-11163289)
chr5 (211-259)||(23087736-23087784)
chr5 (209-257)||(39154716-39154764)
chr5 (209-257)||(41059744-41059792)
chr5 (209-256)||(10274384-10274431)
chr5 (209-248)||(13060557-13060596)
chr5 (209-260)||(29922144-29922195)
chr5 (209-256)||(35083323-35083370)
chr5 (209-259)||(9477417-9477467)
chr5 (219-261)||(10537192-10537234)
chr5 (209-261)||(41125752-41125805)
chr5 (211-248)||(43319095-43319132)
chr5 (209-260)||(2577383-2577435)
chr5 (209-261)||(2878632-2878684)
chr5 (209-253)||(3977560-3977604)
chr5 (209-261)||(5559874-5559926)
chr5 (209-261)||(17657321-17657373)
chr5 (209-261)||(27805994-27806046)
chr5 (209-261)||(40697085-40697137)
chr5 (212-248)||(41534724-41534760)
[»] chr3 (15 HSPs)
chr3 (209-261)||(34707668-34707720)
chr3 (209-295)||(20685834-20685916)
chr3 (209-261)||(1516053-1516105)
chr3 (209-261)||(42956134-42956186)
chr3 (209-258)||(40581031-40581080)
chr3 (220-305)||(3870192-3870273)
chr3 (209-261)||(29830594-29830646)
chr3 (209-261)||(37778212-37778264)
chr3 (209-261)||(53787707-53787759)
chr3 (209-248)||(10449069-10449108)
chr3 (209-305)||(22809148-22809240)
chr3 (209-292)||(40240532-40240611)
chr3 (209-259)||(52895360-52895410)
chr3 (209-261)||(7124650-7124702)
chr3 (213-261)||(29830717-29830765)
[»] chr1 (20 HSPs)
chr1 (208-305)||(3069808-3069901)
chr1 (209-305)||(48819338-48819430)
chr1 (212-305)||(6337714-6337803)
chr1 (209-261)||(22593362-22593414)
chr1 (209-261)||(28690083-28690135)
chr1 (209-305)||(15515302-15515394)
chr1 (209-305)||(41196665-41196757)
chr1 (209-261)||(14460996-14461048)
chr1 (209-261)||(16888921-16888973)
chr1 (209-261)||(41003466-41003518)
chr1 (209-261)||(41130073-41130125)
chr1 (209-260)||(16708879-16708930)
chr1 (211-261)||(12871432-12871482)
chr1 (209-261)||(391254-391307)
chr1 (209-254)||(9572739-9572784)
chr1 (209-258)||(38781160-38781209)
chr1 (209-261)||(1005419-1005471)
chr1 (209-257)||(28870286-28870334)
chr1 (209-261)||(37329367-37329419)
chr1 (209-261)||(51477773-51477825)
[»] scaffold0157 (1 HSPs)
scaffold0157 (209-261)||(24826-24878)
[»] chr8 (19 HSPs)
chr8 (209-305)||(32975726-32975818)
chr8 (212-292)||(14262378-14262454)
chr8 (209-258)||(10213777-10213826)
chr8 (209-261)||(8752885-8752937)
chr8 (220-305)||(10298892-10298973)
chr8 (209-261)||(25333656-25333708)
chr8 (209-261)||(25465802-25465854)
chr8 (209-253)||(28280796-28280840)
chr8 (209-261)||(32131519-32131571)
chr8 (209-261)||(41145351-41145403)
chr8 (209-248)||(16926683-16926722)
chr8 (209-305)||(24350474-24350566)
chr8 (209-305)||(38895698-38895790)
chr8 (220-292)||(2563410-2563478)
chr8 (209-258)||(32212970-32213019)
chr8 (209-261)||(19925636-19925688)
chr8 (209-261)||(34286519-34286571)
chr8 (209-261)||(35286007-35286059)
chr8 (209-261)||(42363272-42363324)
[»] scaffold0015 (1 HSPs)
scaffold0015 (209-259)||(48583-48633)
[»] scaffold0024 (1 HSPs)
scaffold0024 (219-263)||(97174-97218)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Original strand, 44475285 - 44475740
Alignment:
Q  20 acgacgaatccatttgatctggtaccagcaaattgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctg 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44475285 acgacgaatccatttgatctggtacaagcaaattgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctg 44475384  T
Q  120 ccaccttatacaacgatggctaccctcctgtaacattcaacttcaactacttaattcctttcggcgttccctctggcatctataattgcaataaataagt 219  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44475385 ccaccttatacaacgatggctaccctcctataacattcaacttcaactacttgattcctttcggcgttccctctggcatctataattgcaataaataagt 44475484  T
Q  220 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta------atgtatct 313  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||      || |||||    
T  44475485 ttttatgttaattcgtaagttctcactaatgaaaattgtatcattgatcagaagttgttttttcataaactacattgataagcttatgaatcatttatct 44475584  T
Q  314 --cgattcatcaaagaatataatgatagctaatgagtttctacatttatttggcgtcaaataacacatattgctttcgataaaccgatgacaatgttgat 411  Q
      |||||||||||||     ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44475585 cgcgattcatcaaag-----aatgatagctaatgagtttctgcatttatttagcgtcaaataacacatattgctttcgataaaccgatgacaatgttgat 44475679  T
Q  412 ttgctgtannnnnnnctcaatcaaaccattcagcccgtgtaattatttttcttcaactttg 472  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  44475680 ttgctgtatttttttctcaatcaaaccattcagcccgtgtaattatttttcttcaactttg 44475740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 44485525 - 44485681
Alignment:
Q  51 attgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatggctaccctcctgt 150  Q
    ||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| || ||||||||||||    
T  44485525 attgtataggcaaaatctgcaatatgatctttgttaggtttggaacaaatggttggatgccagagtctgccaccttatactacggtgactaccctcctgt 44485624  T
Q  151 aacattcaacttcaactacttaattcctttcggcgttccctctggcatctataattg 207  Q
     |||||||||||||||||||| |||||||  || |||||||| || ||| |||||||    
T  44485625 tacattcaacttcaactacttcattccttcgggtgttccctccggtatcaataattg 44485681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 7480854 - 7480906
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||||| |||||||| |||||| |||||||||||    
T  7480854 aataaataagtttttatgttaattcataagttctgactaatgaaaattgtatc 7480906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 4027056 - 4026964
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||| | |||||||||||| |||||||||||||| ||||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  4027056 aataaataagctattatgttaattcataagttctcactaacaaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 4026964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 44471251 - 44471363
Alignment:
Q  51 attgtataggcaaaatctgcagtatgttcttcgttaggtttggaacagatggttggataccagagtctgccaccttatacaacgatggctaccctcctgt 150  Q
    |||||||||| |||||||||| ||||  ||| |||||  |||||| ||||||||||||||||||| | |||| | ||||| ||  || |||||||||| |    
T  44471251 attgtataggaaaaatctgcaatatgcactttgttagtgttggaagagatggttggataccagagaccgccatcgtataccaccgtgactaccctcctat 44471350  T
Q  151 aacattcaacttc 163  Q
     || |||||||||    
T  44471351 caccttcaacttc 44471363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 8832588 - 8832536
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||||| |||||||  |||||||||||    
T  8832588 aataaataagcttttatgttaattcataagttttcactaacgaaaattgtatc 8832536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 23956219 - 23956271
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||||  |||||||||| |||  |||||||||||    
T  23956219 aataaataagtttttatgttaatttataagttctcattaacgaaaattgtatc 23956271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 38216150 - 38216098
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||||||||||| || ||||||||||||||  |||||||||||    
T  38216150 aataaataagcttttatgttaactcataagttctcactaacgaaaattgtatc 38216098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 736094 - 736043
Alignment:
Q  210 ataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||||| ||||    
T  736094 ataaataagtttttatgttaatttataagttctcaataacaaaaattatatc 736043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 29774876 - 29774825
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    |||||||||| ||||| |||||||| ||||||||||||||  ||||||||||    
T  29774876 aataaataagcttttacgttaattcataagttctcactaacgaaaattgtat 29774825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 887543 - 887491
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||| ||||| |||||||||||||| ||||||||  ||||| |||||||||||    
T  887543 aatagataagcttttatgttaattcataagttcttgctaatgaaaattgtatc 887491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 11777115 - 11777063
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||| ||  |||||||||||||| ||||| ||||||    
T  11777115 aataaataaggttttatgttagtttataagttctcactaacaaaaagtgtatc 11777063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 35235236 - 35235200
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcac 245  Q
    |||||||||| |||||||||||||| |||||||||||    
T  35235236 aataaataagattttatgttaattcataagttctcac 35235200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 488339 - 488431
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||    | |||  ||||||||||||||||| |||| |||||||    
T  488339 aataaataagcttttatgttaattcataagttctcactaataaaaattgtatcttt----acaagcaattttttcataaactaccttgacaagctta 488431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 36254992 - 36255043
Alignment:
Q  210 ataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||| |||||||||||||| ||||||||||||||| |||||||||||    
T  36254992 ataaataagcttttatgttaattcataagttctcactaattaaaattgtatc 36255043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 38345777 - 38345861
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattga 297  Q
    |||||||||| |||||||||||||| ||||||||  |||||||||||||||||     ||| ||||| |||||||||||||||| ||||    
T  38345777 aataaataagcttttatgttaattcataagttctggctaataaaaattgtatc----ttcataagttgttttttcataaactactttga 38345861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 8130610 - 8130560
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  8130610 aataaataagtttttatgttaattcataagttttcactaacaaaaattgta 8130560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 23335771 - 23335681
Alignment:
Q  211 taaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||| |||||||||||||||||| |||||||||||| || |||||||||||     ||| ||| | |||||||||||||||| |||||| |||||    
T  23335771 taaacaagtttttatgttaattcataagttctcacttatgaaaattgtatc----ttcataagctgttttttcataaactaccttgatatgctta 23335681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 12495599 - 12495651
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||||  ||||||||||||||| || ||||||||    
T  12495599 aataaataagtttttatgttaatttataagttctcactaatgaatattgtatc 12495651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 17222960 - 17222908
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||||| |||||||| |||||  |||||||||||    
T  17222960 aataaataagtttttatgttaattcataagttctaactaacgaaaattgtatc 17222908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 29877770 - 29877718
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||||||||||    
T  29877770 aatatataagcttttatgttaattcataagttctcactaacaaaaattgtatc 29877718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 34633521 - 34633470
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    |||||||||| |||||||||||||| |||||||||||| || ||||||||||    
T  34633521 aataaataagcttttatgttaattcataagttctcacttatgaaaattgtat 34633470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 43699404 - 43699455
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    ||||||||||||||||||||||||| ||||||| ||||| | ||||||||||    
T  43699404 aataaataagtttttatgttaattcataagttcccactagtgaaaattgtat 43699455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 14987555 - 14987604
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 258  Q
    ||||||||||||||||| ||||||| ||||||||||||||  ||||||||    
T  14987555 aataaataagtttttatattaattcataagttctcactaacgaaaattgt 14987604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 32628898 - 32628857
Alignment:
Q  220 ttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  32628898 ttttatgttaattcgtaagttctcactgatcaaaattgtatc 32628857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 11256616 - 11256668
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| ||||||||| ||||  |||||||||||    
T  11256616 aataaataagcttttatgttaattcataagttctcgctaactaaaattgtatc 11256668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 18424233 - 18424285
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||||| ||| ||| ||||||||||||    
T  18424233 aataaataagcttttatgttaattcataagttttcaataacaaaaattgtatc 18424285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 22273911 - 22273859
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||  |||||||||||||| ||| |||||||||| ||||||||||||    
T  22273911 aataaataaacttttatgttaattcataacttctcactaacaaaaattgtatc 22273859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 23297566 - 23297514
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||||||| |||||| ||||||||| |||| ||||||||||||    
T  23297566 aataaataagcttttatgctaattcataagttctcgctaacaaaaattgtatc 23297514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 34526292 - 34526344
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||||||||||||   |||||||||||    
T  34526292 aataaataagcttttatgttaattcataagttctcactatggaaaattgtatc 34526344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 36741035 - 36740983
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||| |||| |||| ||||||||||||||| |||||||||||    
T  36741035 aataaataagcttttgtgttgattcataagttctcactaatgaaaattgtatc 36740983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 48687065 - 48687013
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||  || ||||||||||| ||||||||||||||| |||||||||||    
T  48687065 aataaataaacttatatgttaattcataagttctcactaatgaaaattgtatc 48687013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 48721951 - 48721899
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||| ||||||| |||||||||||||| ||||||| ||||    
T  48721951 aataaataagcttttatattaattcataagttctcactaacaaaaattatatc 48721899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 24101895 - 24101946
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    ||||||||||||||||||||||||  |||||||||||  | |||||||||||    
T  24101895 aataaataagtttttatgttaatttataagttctcacggacaaaaattgtat 24101946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 29615486 - 29615439
Alignment:
Q  214 ataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||| ||||||| |||||| |||||||||||||| ||||||||||||    
T  29615486 ataagcttttatgctaattcttaagttctcactaacaaaaattgtatc 29615439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 33534055 - 33534008
Alignment:
Q  213 aataagtttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    ||||||||||||||||| ||| ||||||||||||||  ||||||||||    
T  33534055 aataagtttttatgttagttcataagttctcactaacgaaaattgtat 33534008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 41229034 - 41228942
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    ||||||| || |||||| ||||||| |||||||| |||||| ||||||||||| || |||   |||| |||||||||||||||| || | |||||||    
T  41229034 aataaattagcttttatattaattcataagttctaactaatgaaaattgtatc-ttcatc---agttgttttttcataaactaccttaacaagctta 41228942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 15184674 - 15184625
Alignment:
Q  212 aaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||||||| ||||||  ||||||||||||||  |||||||||||    
T  15184674 aaataagtttttattttaatttataagttctcactaacgaaaattgtatc 15184625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 825813 - 825761
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||| | ||||||| ||||| ||||||    
T  825813 aataaataagattttatgttaattcataagctttcactaacaaaaaatgtatc 825761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 23284746 - 23284798
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||| ||||||  |||| |||||||||  |||||||||||    
T  23284746 aataaataagtttttattttaatttataagctctcactaacgaaaattgtatc 23284798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 46704225 - 46704277
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||| ||| ||||||| ||||||| ||||||||||||||| |||||| ||||    
T  46704225 aataagtaactttttatattaattcataagttctcactaatgaaaattttatc 46704277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 48591379 - 48591431
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||||| |||||||| |||||||||| |||  |||||||||||    
T  48591379 aataaataagcttttacgttaattcataagttctcattaacgaaaattgtatc 48591431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 32675844 - 32675920
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaac 289  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||     ||| |||||||||||||||||||    
T  32675844 aataaataagtttttatattaattcataagttctcactaatgaaaattgtatc----ttcataagttattttttcataaac 32675920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 9202354 - 9202406
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  9202354 aataaataagcttttatgttaattcataagttatcactaataaaaattgtatc 9202406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 7267913 - 7267876
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcact 246  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7267913 aataaataagcttttatgttaattcgtaagttctcact 7267876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 2255865 - 2255813
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| || ||||||||||  ||||||||||||    
T  2255865 aataaataagcttttatgttaattcatatgttctcactaccaaaaattgtatc 2255813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 6758759 - 6758666
Alignment:
Q  209 aataaataag-tttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||| ||||||| ||||||| ||||||||||||||  ||| ||||||| |||||   |||||| ||||||||||||||| || | |||||||    
T  6758759 aataaataagctttttatattaattcataagttctcactaacgaaatttgtatc-ttgat---aagttaatttttcataaactaccttaacaagctta 6758666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 9201676 - 9201715
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaa 248  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  9201676 aataaataagcttttatgttaattcataagttctcactaa 9201715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 2040136 - 2040186
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    ||||||||||||||||| ||||||  |||||||| |||||| |||||||||    
T  2040136 aataaataagtttttatattaatttataagttctaactaatgaaaattgta 2040186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 10755238 - 10755292
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcat 263  Q
    |||||||||| |||||||||||||| |||||||| |||||  |||||||| ||||    
T  10755238 aataaataagcttttatgttaattcataagttcttactaacgaaaattgtttcat 10755292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 6752943 - 6752891
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||| ||||||| ||| | ||||||||| |||||||||||    
T  6752943 aataaataagcttttatattaattcataaatcctcactaatgaaaattgtatc 6752891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 10054510 - 10054458
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||| | ||||||| ||||| |||||||| ||||||| |||||||||||    
T  10054510 aataaataggcttttatgctaatttgtaagttcccactaatgaaaattgtatc 10054458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 10874115 - 10874063
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||||| |||| ||  |||||||||||    
T  10874115 aataaataagcttttatgttaattcataagttttcaccaactaaaattgtatc 10874063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 23239378 - 23239326
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||| ||||||| ||||||||||||||  ||| |||||||    
T  23239378 aataaataagcttttatattaattcataagttctcactaaggaaagttgtatc 23239326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 32165216 - 32165268
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||| ||||||  |||| |||||||||  |||||||||||    
T  32165216 aataaataagtttttattttaatttataagctctcactaacgaaaattgtatc 32165268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 35071383 - 35071419
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcac 245  Q
    |||||||||| |||||||||||||| |||||||||||    
T  35071383 aataaataagcttttatgttaattcataagttctcac 35071419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 35111305 - 35111357
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||  |||||| ||||||||||||||||| ||||  |||||||||||    
T  35111305 aataaataaacttttatcttaattcgtaagttctcgctaacgaaaattgtatc 35111357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 46744084 - 46744032
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||||||||    
T  46744084 aataaataagcttttatgttaattcgtaagttctcactaacgaaaattgtatc 46744032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 43818833 - 43818883
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  43818833 aataaataagtttttatcttaattcataagttctcactaatgaaaattgta 43818883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 44613428 - 44613520
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||| |||||| ||||||| |||||||| | ||||||||||||||||     ||| ||||| |||||||||||||||| || | |||||||    
T  44613428 aataaataagcttttatattaattcataagttctaattaataaaaattgtatc----gtcataagttgttttttcataaactaccttaacaagctta 44613520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 47654369 - 47654419
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    ||||||||||||||||| ||||||| ||||||||||||||  |||||||||    
T  47654369 aataaataagtttttatcttaattcataagttctcactaacgaaaattgta 47654419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 33288030 - 33288082
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||||| |||||| |||||||  |||| ||||||    
T  33288030 aataaataagtttttatgttaattcataagttttcactaacgaaaactgtatc 33288082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 14691254 - 14691346
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||  |||||||||||||| ||||||||||||||  |||||| ||||     ||| || || |||||||||||| |||||||| |||||||    
T  14691254 aataaataaccttttatgttaattcataagttctcactaacgaaaattatatc----ttcataaattgttttttcataaattacattgacaagctta 14691346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 33204965 - 33204926
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaa 248  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  33204965 aataaataagcttttatgttaattcataagttctcactaa 33204926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 22032893 - 22032843
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    ||||||||||||||||| ||||||  ||||||||||||||  |||||||||    
T  22032893 aataaataagtttttatcttaatttataagttctcactaacgaaaattgta 22032843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 23356447 - 23356497
Alignment:
Q  210 ataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    ||||||||| |||||||||||||| || ||||||||||| |||||| ||||    
T  23356447 ataaataagcttttatgttaattcataggttctcactaacaaaaatagtat 23356497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 48021605 - 48021655
Alignment:
Q  211 taaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||| ||||||| ||||||| |||||| |||||||| |||||||||||    
T  48021605 taaataattttttatattaattcataagttttcactaatgaaaattgtatc 48021655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 49104323 - 49104369
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaat 255  Q
    ||||||||| ||||||||||||||| ||| |||||||| ||||||||    
T  49104323 aataaataaatttttatgttaattcataaattctcactcataaaaat 49104369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 30181681 - 30181636
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaa 254  Q
    |||||||||| |||||||||||||| ||||||| ||||||| ||||    
T  30181681 aataaataagcttttatgttaattcataagttcccactaatgaaaa 30181636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 38372689 - 38372640
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 258  Q
    ||||||| || |||||||||||||| ||||||||||||||  ||||||||    
T  38372689 aataaatcagcttttatgttaattcataagttctcactaacgaaaattgt 38372640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 1401204 - 1401152
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||||||| ||| | ||||| ||||||    
T  1401204 aataaataagcttttatgttaattcataagttcttacttacaaaaagtgtatc 1401152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 29378776 - 29378724
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||||| |||||||| |||||||| |||||  |||||||||||    
T  29378776 aataaataagcttttacgttaattcataagttcttactaacgaaaattgtatc 29378724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 34923064 - 34923012
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||| ||| ||||||||||||||  |||| ||||||    
T  34923064 aataaataagcttttatgttagttcataagttctcactaacgaaaagtgtatc 34923012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 1576750 - 1576669
Alignment:
Q  220 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||||||| |||||||||||||| ||||||||||||     ||| ||||| ||||| ||||||||||||||| |||||||    
T  1576750 ttttatgttaattcttaagttctcactaacaaaaattgtatc----ttcacaagttgtttttccataaactacattgacaagctta 1576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 1608065 - 1608146
Alignment:
Q  220 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||||||| |||||||||||||| ||||||||||||     ||| ||||| ||||| ||||||||||||||| |||||||    
T  1608065 ttttatgttaattcttaagttctcactaacaaaaattgtatc----ttcacaagttgtttttccataaactacattgacaagctta 1608146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 41419632 - 41419540
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    ||||||||||||||||||||||||  ||||||||||||||  |||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  41419632 aataaataagtttttatgttaattgataagttctcactaacgaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 41419540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 29659191 - 29659141
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  29659191 aataaataagtttttatcttaattcataagttctcactaatgaaaattgta 29659141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 1943126 - 1943074
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||||||| |||||| ||||||||||||||| |||||||||||    
T  1943126 aataaataagcttttatgctaattcataagttctcactaatgaaaattgtatc 1943074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 11912057 - 11912109
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||| |||||||||| |||||||||||||| ||||||||||||    
T  11912057 aataaataagctttcatgttaattcataagttctcactaacaaaaattgtatc 11912109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 24030345 - 24030293
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| ||||||||||||||  |||||||||||    
T  24030345 aataaataagcttttatgttaattcataagttctcactaacgaaaattgtatc 24030293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 28357483 - 28357435
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattg 257  Q
    ||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  28357483 aataaataagtttttatcttaattcgtaagttctcactaacgaaaattg 28357435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 43268591 - 43268643
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||  |||||||||||||| ||||||||||||    
T  43268591 aataaataagcttttatgttaatttataagttctcactaacaaaaattgtatc 43268643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 28625611 - 28625519
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||| |||||||||||||| || |||||||||||  |||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  28625611 aataaataagcttttatgttaattcataggttctcactaacgaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 28625519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 42852150 - 42852101
Alignment:
Q  211 taaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    |||||||| |||||||||||||| ||||||||||||||  ||||||||||    
T  42852150 taaataagcttttatgttaattcataagttctcactaacgaaaattgtat 42852101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 6150912 - 6150872
Alignment:
Q  220 ttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  6150912 ttttatgttaattcgtaagttctcagtaacaaaaattgtat 6150872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 7364264 - 7364316
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||| ||||||| |||||||||||||| ||| ||||||||    
T  7364264 aataaataagcttttatattaattcataagttctcactaacaaatattgtatc 7364316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 11163237 - 11163289
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| ||||||| ||||||  |||||||||||    
T  11163237 aataaataagcttttatgttaattcataagttcgcactaacgaaaattgtatc 11163289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 23087736 - 23087784
Alignment:
Q  211 taaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    ||||| ||||||||| ||||||| |||||||||||||| ||||||||||    
T  23087736 taaattagtttttatattaattcataagttctcactaacaaaaattgta 23087784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 39154716 - 39154764
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattg 257  Q
    |||||||||| |||| ||||||||| |||||||||| ||||||||||||    
T  39154716 aataaataagcttttgtgttaattcataagttctcaataataaaaattg 39154764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 41059744 - 41059792
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattg 257  Q
    |||||||||| |||||||||||||| ||||||||||||||  |||||||    
T  41059744 aataaataagcttttatgttaattcataagttctcactaacgaaaattg 41059792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 10274431 - 10274384
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaatt 256  Q
    |||||||||||||||||| ||||||||||||||||  ||| |||||||    
T  10274431 aataaataagtttttatgataattcgtaagttctctttaacaaaaatt 10274384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 13060557 - 13060596
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaa 248  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  13060557 aataaataagcttttatgttaattcataagttctcactaa 13060596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 29922144 - 29922195
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    |||||||||| |||||| ||||||| |||| ||||||||| |||||||||||    
T  29922144 aataaataagcttttatattaattcataagctctcactaaaaaaaattgtat 29922195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 35083370 - 35083323
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaatt 256  Q
    |||||||||| |||||||||||||| |||||||||||| || ||||||    
T  35083370 aataaataagcttttatgttaattcataagttctcactgatgaaaatt 35083323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 9477467 - 9477417
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    ||||||||||||||||| ||||||| |||||||||| |||  |||||||||    
T  9477467 aataaataagtttttatcttaattcataagttctcagtaacgaaaattgta 9477417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 10537192 - 10537234
Alignment:
Q  219 tttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||| ||||||||||||||  |||||||||||    
T  10537192 tttttatgttaattcataagttctcactaacgaaaattgtatc 10537234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 41125805 - 41125752
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaa-taaaaattgtatc 261  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||| |||||||    
T  41125805 aatatataagcttttatgttaattcataagttctcactaactaaaatttgtatc 41125752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 43319132 - 43319095
Alignment:
Q  211 taaataagtttttatgttaattcgtaagttctcactaa 248  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  43319132 taaataagtttttatcttaattcataagttctcactaa 43319095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 2577383 - 2577435
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaa-taaaaattgtat 260  Q
    ||||||||| || |||||||||||| ||||||||||||||  |||||||||||    
T  2577383 aataaataaattgttatgttaattcataagttctcactaacgaaaaattgtat 2577435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 2878632 - 2878684
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||   ||||| ||||||| ||||||||||||    
T  2878632 aataaataagcttttatgttaatttaaaagttttcactaacaaaaattgtatc 2878684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 3977604 - 3977560
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaa 253  Q
    |||||||||| |||||||||||||| || ||||||||||| ||||    
T  3977604 aataaataagcttttatgttaattcatacgttctcactaacaaaa 3977560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 5559874 - 5559926
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||| ||||| ||| ||||||||||  |||||||||||    
T  5559874 aataaataagcttttatgtaaattcataaattctcactaacgaaaattgtatc 5559926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 17657373 - 17657321
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||  |||||||||||||| ||||||||||||||  ||||| |||||    
T  17657373 aataaataaccttttatgttaattcataagttctcactaacgaaaatcgtatc 17657321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 27806046 - 27805994
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||  |||||||||||||  |||||| ||||||| ||||||||||||    
T  27806046 aataaataaacttttatgttaatttataagttttcactaacaaaaattgtatc 27805994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 40697137 - 40697085
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||||| |||  || ||||||||||||    
T  40697137 aataaataagcttttatgttaattcataagttttcaggaacaaaaattgtatc 40697085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 41534760 - 41534724
Alignment:
Q  212 aaataagtttttatgttaattcgtaagttctcactaa 248  Q
    |||||||||||||||||||||| || |||||||||||    
T  41534760 aaataagtttttatgttaattcatatgttctcactaa 41534724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 34707668 - 34707720
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  34707668 aataaataagtttttatgttaattcgtaagttctcgctaacgaaaattgtatc 34707720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 20685916 - 20685834
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacatt 295  Q
    |||||||||||||||||| ||||||  |||||||||||||| |||||||||||     ||| ||||| |||||| ||||||||||||    
T  20685916 aataaataagtttttatgataattcacaagttctcactaatgaaaattgtatc----ttcataagttgttttttgataaactacatt 20685834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 1516053 - 1516105
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||| ||||||  ||||||||||||||| |||||||||||    
T  1516053 aataaataagtttttattttaatttataagttctcactaatgaaaattgtatc 1516105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 42956134 - 42956186
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||||  ||||||||||||||  |||||||||||    
T  42956134 aataaataagtttttatgttaatttataagttctcactaacgaaaattgtatc 42956186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 40581031 - 40581080
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 258  Q
    |||||||||| |||||||||||||| ||||||||||||||  ||||||||    
T  40581031 aataaataagattttatgttaattcataagttctcactaacgaaaattgt 40581080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 3870192 - 3870273
Alignment:
Q  220 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||||||| |||||||||| |||| |||| ||||||||    || | ||| |||||||||||||||| |||| |||||||    
T  3870192 ttttatgttaattcataagttctcattaatgaaaagtgtatcat----catatgttgttttttcataaactaccttgacaagctta 3870273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 29830594 - 29830646
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||| ||||||  ||||||||||||||  |||||||||||    
T  29830594 aataaataagtttttattttaatttataagttctcactaacgaaaattgtatc 29830646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 37778264 - 37778212
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||| ||||||  |||||||||||||| ||||||||||||    
T  37778264 aataaataagcttttattttaatttataagttctcactaacaaaaattgtatc 37778212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 53787707 - 53787759
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||| ||||||| |||||||||| ||| ||||||| ||||    
T  53787707 aataaataagtttttatcttaattcataagttctcaataacaaaaattatatc 53787759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 10449108 - 10449069
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaa 248  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  10449108 aataaataagtttttatcttaattcataagttctcactaa 10449069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 22809148 - 22809240
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    ||||||||||||||||||||||||| ||||||||   |||  ||||||||||| || || || ||   |||||||||||||||| |||| |||||||    
T  22809148 aataaataagtttttatgttaattcataagttcttcttaacgaaaattgtatc-ttcataagcag---ttttttcataaactaccttgacaagctta 22809240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 40240532 - 40240611
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactac 292  Q
    |||||||||| |||||| ||||||| |||| |||||||||  |||||||||||     ||| ||||| ||||||||||||||||    
T  40240532 aataaataagcttttatcttaattcataagctctcactaacgaaaattgtatc----ttcataagttgttttttcataaactac 40240611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 52895360 - 52895410
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    |||||||||| |||||||||||||| ||| ||||||||||  |||||||||    
T  52895360 aataaataagcttttatgttaattcataaattctcactaacgaaaattgta 52895410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 7124650 - 7124702
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||||||| |||||||||  |||||||| | ||| ||||||||||||    
T  7124650 aataaataagttttgatgttaattgataagttcttattaacaaaaattgtatc 7124702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 29830717 - 29830765
Alignment:
Q  213 aataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||| ||||||  |||||||||| ||| ||||||||||||    
T  29830717 aataagtttttattttaatttataagttctcagtaacaaaaattgtatc 29830765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 305
Target Start/End: Original strand, 3069808 - 3069901
Alignment:
Q  208 caataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    ||||||||||| |||||||||||||| ||||||||||||| | |||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  3069808 caataaataagcttttatgttaattcataagttctcactagtgaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 3069901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 48819430 - 48819338
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||| ||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  48819430 aataaataagcttttatgttaattcataagttctcactaacaaaaaatgtatc----ttcataagctgttttttcataaactaccttgacaagctta 48819338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 6337714 - 6337803
Alignment:
Q  212 aaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    ||||||| |||||||||||||| ||||||||| |||| ||||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  6337714 aaataagcttttatgttaattcataagttctcgctaacaaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 6337803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 22593362 - 22593414
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||  |||||||||||||| ||||||||||||    
T  22593362 aataaataagcttttatgttaatttataagttctcactaacaaaaattgtatc 22593414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 28690135 - 28690083
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||||||||    
T  28690135 aataaataagcttttatgttaattcagaatttctcactaataaaaattgtatc 28690083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 15515302 - 15515394
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||| ||| |||||||||| ||||||||||||||  |||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  15515302 aataaataagctttcatgttaattcataagttctcactaacgaaaattgtatc----ttcataagctcttttttcataaactaccttgacaagctta 15515394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 41196665 - 41196757
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    ||||||||||  |||||||||||||  ||| ||||||||| ||||||||||||     ||| ||| | ||||||||||||||||||||| |||||||    
T  41196665 aataaataagcctttatgttaattcacaagctctcactaacaaaaattgtatc----ttcataagctgttttttcataaactacattgacaagctta 41196757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 14460996 - 14461048
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||| || ||||||||||||||  ||||||||||||||| |||||||||||    
T  14460996 aataaacaaatttttatgttaatttataagttctcactaatgaaaattgtatc 14461048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 16888921 - 16888973
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||||||||||| || ||| ||||||||||| |||||||||||    
T  16888921 aataaataagcttttatgttaagtcataaattctcactaatgaaaattgtatc 16888973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 41003518 - 41003466
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||  |||||||||||||  |||||||||||||||||||||| ||||    
T  41003518 aataaataaacttttatgttaattaataagttctcactaataaaaattatatc 41003466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 41130125 - 41130073
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| ||||||  ||||||| |||||||||||    
T  41130125 aataaataagattttatgttaattcttaagtttgcactaatgaaaattgtatc 41130073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 16708930 - 16708879
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtat 260  Q
    ||||||||| ||||||||||||||| |||| ||| |||||| ||||||||||    
T  16708930 aataaataaatttttatgttaattcataagatcttactaatgaaaattgtat 16708879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 12871432 - 12871482
Alignment:
Q  211 taaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||| |||||| ||| |||| ||||| |||||    
T  12871432 taaataagtttttatgttaattcataagttttcattaatgaaaatggtatc 12871482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 391307 - 391254
Alignment:
Q  209 aataaataag-tttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||||||||||||||| ||||||||| ||||  |||||||||||    
T  391307 aataaataagctttttatgttaattcataagttctcgctaacgaaaattgtatc 391254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 9572739 - 9572784
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaa 254  Q
    |||||||||| |||||| ||||||| |||||||||||||| |||||    
T  9572739 aataaataagcttttatattaattcataagttctcactaacaaaaa 9572784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 38781209 - 38781160
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 258  Q
    |||||||| | |||||||||||||| ||||||||||||||  ||||||||    
T  38781209 aataaatatgcttttatgttaattcataagttctcactaaccaaaattgt 38781160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 1005471 - 1005419
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||| || ||| |||||||||| |||||||||||||  ||||||||||||    
T  1005471 aataaatgagctttgatgttaattcataagttctcactatcaaaaattgtatc 1005419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 28870334 - 28870286
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattg 257  Q
    |||||||||| ||||||||| |||| ||||||||||||||  |||||||    
T  28870334 aataaataagcttttatgttcattcataagttctcactaaagaaaattg 28870286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 37329367 - 37329419
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||  ||||||||||| ||  |||||||||||    
T  37329367 aataaataagcttttatgttaatttataagttctcaccaacgaaaattgtatc 37329419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 51477773 - 51477825
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||| |||||||||||| ||||||||||| ||| ||| ||| ||||    
T  51477773 aataaataagtgtttatgttaatttgtaagttctcagtaacaaatattatatc 51477825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 24878 - 24826
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||||||||||||||  ||||||||||||||| || ||||||||    
T  24878 aataaataagtttttatgttaatttataagttctcactaatgaatattgtatc 24826  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 32975818 - 32975726
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||| |||||| ||||||| ||||||||||| || ||||||||||||     ||| ||||| | |||||||||||||| |||| |||||||    
T  32975818 aataaataagcttttatattaattcataagttctcacaaacaaaaattgtatc----ttcataagttgtgttttcataaactaccttgacaagctta 32975726  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 14262454 - 14262378
Alignment:
Q  212 aaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactac 292  Q
    |||||||||||||||||||||| |||| ||| ||||| ||||||||||| ||   ||| ||||| ||||||||||||||||    
T  14262454 aaataagtttttatgttaattcataagatcttactaacaaaaattgtat-at---tcataagttgttttttcataaactac 14262378  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 10213826 - 10213777
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 258  Q
    |||||||||| || ||||||||||| |||||||||||||| |||||||||    
T  10213826 aataaataagcttgtatgttaattcataagttctcactaacaaaaattgt 10213777  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 8752937 - 8752885
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| ||||||||||| || |||| |||||||    
T  8752937 aataaataagcttttatgttaattcataagttctcacaaacaaaatttgtatc 8752885  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 10298892 - 10298973
Alignment:
Q  220 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||||||| |||||||||| ||| ||||||||||||     ||| ||| | |||||||||||||||| |||| |||||||    
T  10298892 ttttatgttaattcataagttctcattaacaaaaattgtatc----ttcataagctgttttttcataaactaccttgacaagctta 10298973  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 25333656 - 25333708
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||||| |||||||  |||||||||||    
T  25333656 aataaataagcttttatgttaattcataagttttcactaacgaaaattgtatc 25333708  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 25465802 - 25465854
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||||||||||| |||||| ||| ||| ||||||||||||    
T  25465802 aataaataagcttttatgttaattcataagttttcagtaacaaaaattgtatc 25465854  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Complemental strand, 28280840 - 28280796
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaa 253  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||    
T  28280840 aataaataagtttttatcttaattcataagttctcactaacaaaa 28280796  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 32131571 - 32131519
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||| ||||| |||||||||||||| ||||||||||||| | |||||||||||    
T  32131571 aatagataagcttttatgttaattcataagttctcactattgaaaattgtatc 32131519  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 41145351 - 41145403
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||||| ||| ||||||| ||||||||||||||| ||||| |||||    
T  41145351 aataaataagtttatatattaattcataagttctcactaatgaaaatcgtatc 41145403  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 16926683 - 16926722
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaa 248  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  16926683 aataaataagtttttatgttaatttataagttctcactaa 16926722  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 24350474 - 24350566
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    |||||||||| |||||||||||||| |||||||| |||||  |||||| ||||     ||| ||| |||||||||||||| ||| |||| |||||||    
T  24350474 aataaataagattttatgttaattcataagttcttactaacgaaaattatatc----ttcataagctattttttcataaattacgttgacaagctta 24350566  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 38895790 - 38895698
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactacattgataagctta 305  Q
    ||||||||||||||||| ||||||  |||||| ||||||| ||| ||||||||     ||| || ||||||||||||||||||| || | |||||||    
T  38895790 aataaataagtttttatattaatttataagttttcactaacaaatattgtatc----ttcataaattattttttcataaactaccttaacaagctta 38895698  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 2563478 - 2563410
Alignment:
Q  220 ttttatgttaattcgtaagttctcactaataaaaattgtatcattgatcagaagttattttttcataaactac 292  Q
    |||||||||||||| |||| ||| ||||||||||||||||| ||   ||| ||||| ||||||||||||||||    
T  2563478 ttttatgttaattcataagatcttactaataaaaattgtat-at---tcaaaagttgttttttcataaactac 2563410  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 32212970 - 32213019
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgt 258  Q
    |||||||||| |||||||||| ||  ||||||||||||||| ||||||||    
T  32212970 aataaataagcttttatgttattttataagttctcactaatgaaaattgt 32213019  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 19925688 - 19925636
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    ||||||||||| ||||| |||||| ||||| |||||||||  |||||||||||    
T  19925688 aataaataagtatttattttaatttgtaagctctcactaacgaaaattgtatc 19925636  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 34286519 - 34286571
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||| ||||||| ||||||||| ||||  |||||||||||    
T  34286519 aataaataagcttttatattaattcataagttctccctaacgaaaattgtatc 34286571  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 35286059 - 35286007
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| ||| | |||||||| ||||||||| ||| |||||||||||||    
T  35286059 aataaataagctttcacgttaattcataagttctcgctactaaaaattgtatc 35286007  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 42363272 - 42363324
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgtatc 261  Q
    |||||||||| |||||| ||||||   ||||||||||||| ||||||||||||    
T  42363272 aataaataagcttttattttaatttaaaagttctcactaacaaaaattgtatc 42363324  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 48583 - 48633
Alignment:
Q  209 aataaataagtttttatgttaattcgtaagttctcactaataaaaattgta 259  Q
    |||||||||| |||||||||||||| ||||||| || ||| ||||||||||    
T  48583 aataaataagcttttatgttaattcataagttcccattaacaaaaattgta 48633  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 97174 - 97218
Alignment:
Q  219 tttttatgttaattcgtaagttctcactaataaaaattgtatcat 263  Q
    |||| |||||||||| ||||||||||||||  |||||||||||||    
T  97174 ttttaatgttaattcataagttctcactaacgaaaattgtatcat 97218  T

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