View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_31 (Length: 329)
Name: NF20408_high_31
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 4239450 - 4239746
Alignment:
| Q |
17 |
aattactaggactcatcattggagttgttgtcttgatagctttgtcagtagtggctgcaatactgttgtttggtctcattattggagttgtggcaacagt |
116 |
Q |
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| T |
4239450 |
aattactaggactcatcattggagttgttgtcttgatagctttgtcagtagtggctgcaatactgttgtttggtctcattattggagttgtggcaacagt |
4239549 |
T |
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| Q |
117 |
agcagcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttccagc |
216 |
Q |
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| T |
4239550 |
agcag---ttgtgttgatca---ttttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttccagc |
4239643 |
T |
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| Q |
217 |
tccaaggatgatgataaatttgtgtcacgtgcactgcttgaatccaccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatg |
316 |
Q |
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| T |
4239644 |
tccaaggatgatgataaatttgtgtcacgtgcactgcttgaatccaccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatg |
4239743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 19921619 - 19921810
Alignment:
| Q |
17 |
aattactaggactcatcattggagttgttgtcttgatagctttgtcagtagtggctgcaatactgttgtttggtctcattattggagttgtggcaacagt |
116 |
Q |
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| T |
19921619 |
aattaataggtctcatcattggagttgttgtcttgatagctttgttagtagtggctgcaatactgttgtttagtctcattattggagttgtggtaacaat |
19921718 |
T |
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| Q |
117 |
agcagcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttcca |
214 |
Q |
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| T |
19921719 |
---agcagttgtgttg---atcattttattcattaacctcatctttgaagacatccatttctcagacccgtaactattctttttgctgctatcttcca |
19921810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 19938478 - 19938669
Alignment:
| Q |
17 |
aattactaggactcatcattggagttgttgtcttgatagctttgtcagtagtggctgcaatactgttgtttggtctcattattggagttgtggcaacagt |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || |
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| T |
19938478 |
aattactaggtctcatcattggagttgttgtcttgatatctttgtcagtagtggctgcaatacttttgtttggtctcattattggagttgtggtaactgt |
19938577 |
T |
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| Q |
117 |
agcagcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttcca |
214 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
19938578 |
---agaagttgtgt---tcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactattctttttattgctatcatcca |
19938669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 19938667 - 19938720
Alignment:
| Q |
263 |
ccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatgatg |
319 |
Q |
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||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |
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| T |
19938667 |
ccataactgactcacatgatgaattataga---gttgttggtgattgcttgatgatg |
19938720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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