View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_32 (Length: 327)
Name: NF20408_high_32
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 39577259 - 39576961
Alignment:
| Q |
19 |
attctagccagggatatattactgaaagatatattttgtattcacaaatttctgatctattccattacaagaacgtcggaacaaggcatactaccagttt |
118 |
Q |
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| T |
39577259 |
attctagccaggtatatattactgaaagatatattttgtattcacaaatttctgatctattccattacaagaacgtcggaacaagtcatactaccagttt |
39577160 |
T |
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| Q |
119 |
ggacctcatgaaaattttcatgccctccaagggttacttagactctagtgcctttccattttgttgcattattagctgcttcttaattcattctccgcag |
218 |
Q |
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| T |
39577159 |
ggacctcatgaaaattttcatgccctccaagggttacttagactctagtgcctttccattttgttgcattattagctgcttcttaattcattctccgcag |
39577060 |
T |
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| Q |
219 |
cattgaattgaacaaataaataaattattataataaatgtgtctaaaatcctaactaaccaatcacgtcttaacgtacagggagctttcctttttcatct |
318 |
Q |
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| T |
39577059 |
cattgaattgaacaaataaataaattattataataaatgtatctaaaatcctaactaaccaatcacgtcttaacgta----gagctttcctttttcatgt |
39576964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 321
Target Start/End: Complemental strand, 39581773 - 39581515
Alignment:
| Q |
61 |
cacaaatttctgatctatt-ccattacaagaacgtcggaacaaggcatactaccagtttggacctcatgaaaattttcatg-ccctccaagg-gttactt |
157 |
Q |
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| T |
39581773 |
cacaaatttctgatcaatttccattataagaacgtcgcgacaaatcatactaccaatttggacctcatgaa--tttccatggccctggaaagagatattt |
39581676 |
T |
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| Q |
158 |
agactctagtgcctttccattttgt-tgcattattagctgcttcttaattcattctccgcagcattgaattgaacaaataaataaattattataataaat |
256 |
Q |
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| T |
39581675 |
agactttggtgccttttcattttggctgcattattatcagcttcttaattcatcctccacagcatt----tgaataaataaataaattattataataagt |
39581580 |
T |
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| Q |
257 |
gtgtctaaaatcctaactaaccaatcacgtcttaacgtacagggagctttcctttttcatctctc |
321 |
Q |
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| T |
39581579 |
gcgtcgaaaatccaaaccaaccaatcatgttttaacgtacagggaacttccatttttcatgtctc |
39581515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 321
Target Start/End: Complemental strand, 39571930 - 39571779
Alignment:
| Q |
175 |
cattttgttgcattattagctgcttcttaattcattctccgcagcatt-gaattgaacaaataaataaa----ttattataataaatgtgtctaaaatcc |
269 |
Q |
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| T |
39571930 |
cattttattgcattattagcagcttcttaatacgttatccgcaacatttgaattgaacaaataaataaacaaattattatattaagtgcgtctaaaacca |
39571831 |
T |
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| Q |
270 |
taactaaccaatcacgtcttaacgtacagggagctttcctttttcatctctc |
321 |
Q |
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| T |
39571830 |
aaactaaccaatcacatttgaacgtacagggaactttcatttttcatgtctc |
39571779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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