View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_33 (Length: 312)
Name: NF20408_high_33
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 52811003 - 52810717
Alignment:
| Q |
18 |
gtaatggccatattccttgtaagccatcatcaattggagttagcattttctacttttctatatatcttgttgcatttggttatggaggacaccaaccaac |
117 |
Q |
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| T |
52811003 |
gtaatggccatattccttgtaagccatcatcaattggagttagcattttctacttttctatatatcttgttgcatttggttatggaggacaccaaccaac |
52810904 |
T |
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| Q |
118 |
cttagcaacctttggagctgaccaatatgatgagaggaatccaaaagagaggagtttaaaagtagctttcttctgttatttttacttttccctcaacgtt |
217 |
Q |
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| T |
52810903 |
cttagcaacctttggagctgaccaatatgatgagaggaatccaaaagagaggagtttaaaagtagctttcttctgttatttttacttttccctcaacgtt |
52810804 |
T |
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| Q |
218 |
ggatctttgttctccaatactgtattggtctattatgaggacacagggaagtggacaatgggtttctttatatcattgatctctgct |
304 |
Q |
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| T |
52810803 |
ggatctttgttctccaatactgtattggtctattatgaggacacggggaagtggacaatgggtttctttatatcattgatctctgct |
52810717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 3804077 - 3804004
Alignment:
| Q |
77 |
atatatcttgttgcatttggttatggaggacaccaaccaaccttagcaacctttggagctgaccaatatgatga |
150 |
Q |
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| T |
3804077 |
atatatatggttgcatttggatatggagggcatcaacctaccttagcaacctttggagctgatcaatttgatga |
3804004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 396577 - 396650
Alignment:
| Q |
77 |
atatatcttgttgcatttggttatggaggacaccaaccaaccttagcaacctttggagctgaccaatatgatga |
150 |
Q |
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| T |
396577 |
atatatttggttgcatttggatatggagggcatcaacctaccttagcaacatttggagctgatcaatttgatga |
396650 |
T |
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