View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_37 (Length: 265)
Name: NF20408_high_37
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 8726024 - 8726259
Alignment:
| Q |
15 |
aaatctcataaactctataaaccttaagcttgcatagttttctggtttaactgtttctgcacaagttggagtcttttctatcataattgagtcacttgaa |
114 |
Q |
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| T |
8726024 |
aaatctcataaactctagaaaccctaagcttgcacagttttctggtttaactgtttctgcacaagttggagtcttttctatcataattgagtcacttgaa |
8726123 |
T |
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| Q |
115 |
ccatctttagtaactgggtctgagttggagtcttttctttgggctttgctcataacaatgccgccctaatcgaaatcaaccttgtccttaagattgaagg |
214 |
Q |
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| T |
8726124 |
ccatctttagtaactgggtctgagttggagtcttttctttgggctttgctcataacaatgccgccctaatcgaaatcaaccttgtccttaagattgaagg |
8726223 |
T |
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| Q |
215 |
tgttgcataagtctgaccaattctcccaagaagtat |
250 |
Q |
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| T |
8726224 |
tgttgcataagtctgaccaattctcccaagaagtat |
8726259 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 26884323 - 26884265
Alignment:
| Q |
23 |
taaactctataaaccttaagcttgcatagttttctggtttaactgtttctgcacaagtt |
81 |
Q |
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||||| ||| |||||||||||||||| ||||||||| || |||||||| |||||||||| |
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| T |
26884323 |
taaaccctagaaaccttaagcttgcacagttttctgtttcaactgtttttgcacaagtt |
26884265 |
T |
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