View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_38 (Length: 263)
Name: NF20408_high_38
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 15570018 - 15570112
Alignment:
| Q |
65 |
gaagagaaggaatccatttctacccccatgaaacgtatgtttaaatttcaaagtttataagtgtttcaaatcacaaacaatttgtacactatgct |
159 |
Q |
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| T |
15570018 |
gaagagaaggaatccatttctactcccatgaaacgtatgtttaaatttcaaagtttataagtgtttcaaatcacaaacaatttgtacactatgct |
15570112 |
T |
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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 15570163 - 15570199
Alignment:
| Q |
209 |
tcaatttatctatatctctcactatatatgtgttagg |
245 |
Q |
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| T |
15570163 |
tcaatttatctataactctcactatatatgtgttagg |
15570199 |
T |
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