View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_high_4 (Length: 487)
Name: NF20408_high_4
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 35 - 443
Target Start/End: Complemental strand, 4147157 - 4146749
Alignment:
| Q |
35 |
caagagtgatggtgaatataacacttgtgtacttcagataaataaataaaaatatcaaaaagaaattccaaactcagatcaagactaccaaaataacctg |
134 |
Q |
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| T |
4147157 |
caagagtgatggtgaatataacacttgtgtacttcagataaataaataaaaatatcaaaaagaaattccaaactcagatcaagactaccaaaataacctg |
4147058 |
T |
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| Q |
135 |
atgcaaataatattctggcaccttataaattatatgtttctctttcgttgataagaaaagcaaaagagagtacaagatttgtcgaagactaagtaagtca |
234 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4147057 |
atgcaaataacaatctggcaccttataaattatatgtttctctttcgttgataagaaaagcaaaagagagtacaagatttgtcgaagactaagtaagtca |
4146958 |
T |
|
| Q |
235 |
tcattcaacaaaataagcaaagctaaacaataataataattagactaactaaggaaaaacgcatcatgtgtttccaactccaagtttgatacttatgttt |
334 |
Q |
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| T |
4146957 |
tcattcaacaaaataagcaaagctaaacaataataataattagactaactaaggaaaaacgcatcatgtgtttccaactccaagtttgatacttatgttt |
4146858 |
T |
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| Q |
335 |
ggctggctataaccaaccacaactatagtgaagtacttggcaatgagacgagactggtagtgtgaagtcataccttaatatcacccacaacaatgtcgtc |
434 |
Q |
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| T |
4146857 |
ggctggctataaccaaccacaactatagtggagtacttggcaatgagacgagactgttagtgtgaagccataccttaatatcacccacaacaatgttgtc |
4146758 |
T |
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| Q |
435 |
aatctttgt |
443 |
Q |
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| T |
4146757 |
aatctttgt |
4146749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 472
Target Start/End: Complemental strand, 4146729 - 4146697
Alignment:
| Q |
440 |
ttgtaactaaaatgcatggtttccctacttgtt |
472 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4146729 |
ttgtaactaaaatgcatggtttccctacttgtt |
4146697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 46671654 - 46671729
Alignment:
| Q |
187 |
aagaaaagcaaaagagagtacaagatttgtc-gaagactaagtaagtcatcattcaacaaaataagcaaagctaaa |
261 |
Q |
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|||||||| || |||||| |||||||||||| |||| | |||||||||||||||| || |||||||||||||||| |
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| T |
46671654 |
aagaaaagtaacagagagcacaagatttgtctgaagtcgaagtaagtcatcattccccataataagcaaagctaaa |
46671729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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