View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20408_high_9 (Length: 453)
Name: NF20408_high_9
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 6 - 438
Target Start/End: Original strand, 9522093 - 9522525
Alignment:
| Q |
6 |
cataggtgttggagcaattcatcacaaacttttaattgcctagtacctctttgagtttaatatttttagattagacataggatactttgaataattgtcg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9522093 |
cataggtgttggagcaattcatcacaaacttttaattgcctagtacctctttgagtttaatatttttagattagatataggatactttgaataattgtcg |
9522192 |
T |
|
| Q |
106 |
gtaatttatccaaaatcccatcaaaattaatcacataagttagttttcaagctgtatccacaaactaactttcactttacctgcaaaattgattaggtga |
205 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9522193 |
gtaatttatccaaaaacccatcaaaattaatcacataagttagttttcaagctgtatccacaaactaactttcactttacctgcaaaattgattaggtga |
9522292 |
T |
|
| Q |
206 |
ctaattttgatttgatgataggtaaattacctacacaattcttcaaaagaaatatatnnnnnnntcaccaaaatgaattaaagcatttttccattcatta |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9522293 |
ctaattttgatttgatgataggtaaattacctacacaattcttcaaaagaaatatgtaaaaaaatcaccaatatgaattaaagcatttttccattcatta |
9522392 |
T |
|
| Q |
306 |
ttgccaattcttttccattaacacttcacttttttattttgaccaagataaacactttacttaaactagtcaacttgcttattttcatccaatccgaaat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9522393 |
ttgccaattcttttccattaacacttcacttttttattttgaccaagataaacactttacttaacctagtcaacttccttattttcatccaatccgaaat |
9522492 |
T |
|
| Q |
406 |
catttattttaatcaaaatcaatcggtcaaatc |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9522493 |
catttattttaatcaaaatcaatcggtcaaatc |
9522525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 20195628 - 20195865
Alignment:
| Q |
6 |
cataggtgttggagcaattcatcacaaacttttaattgcctagtacctctttgagtttaatatttttagattagacataggatactttgaataattgtcg |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
20195628 |
cataggtgttggagcaattcgtcacaaacttttaattgtctagtacctctttgagattaatatttttaga-----cattggttactttgaataattgtcg |
20195722 |
T |
|
| Q |
106 |
gtaatttatccaaaatcccatcaaaattaatcacataagttagttttcaagctgtatccacaaactaactttcactttacctgcaaaattgattaggtga |
205 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| |||||| |||| |||| || | | ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20195723 |
gtaatttaaacaaaaatccatcaaaattaatcacagaagttaattttaaagcggttttctcaaactaactttcactttacctgcaaaattgcttaggtga |
20195822 |
T |
|
| Q |
206 |
ctaattttgatttgatgataggtaaattacctacacaattctt |
248 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
20195823 |
ctaattttgattggatgataggtaaattatctacacaattctt |
20195865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 20194653 - 20194522
Alignment:
| Q |
6 |
cataggtgttggagcaattcatcacaaacttttaattgcctagtacctctttgagtttaatatttttagattagacataggatactttgaataattgtcg |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
20194653 |
catagatgttggagcaattcatcacaaacttttaattgtctagtaccgctttgagattaatatttttaga-----catgtgctactttgaataattgtcg |
20194559 |
T |
|
| Q |
106 |
gtaatttatccaaaatcccatcaaaattaatcacata |
142 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |
|
|
| T |
20194558 |
gtaatttaaacaaaaatccatcaaaattaatcacata |
20194522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 20195906 - 20195949
Alignment:
| Q |
395 |
caatccgaaatcatttattttaatcaaaatcaatcggtcaaatc |
438 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
20195906 |
caatccgaaatcatttattttaataaaaatcaattggtcaaatc |
20195949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 436
Target Start/End: Complemental strand, 23047282 - 23047199
Alignment:
| Q |
353 |
ataaacactttacttaaactagtcaacttgcttattttcatccaatccgaaatcatttattttaatcaaaatcaatcggtcaaa |
436 |
Q |
| |
|
||||||| ||||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
23047282 |
ataaacattttacttaaccgagtcaacttccttattttcatccaatcctaaatcatttattttaatgaaaatcaattggtcaaa |
23047199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University