View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_11 (Length: 446)
Name: NF20408_low_11
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_11 |
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| [»] scaffold0181 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: scaffold0181 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 11526 - 11117
Alignment:
| Q |
18 |
aaaagaacacttgatcaattccttcccttgatgcaacaagagtcattgagattcttaaaacttttgcagaagaaaggagaagctggcaacgccgttgatg |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11526 |
aaaagaacacttgatcaattccttccattgatgcaacaagagtcattgagattcttaaaacttttgcagaagataggagaagctggcaacgccgttgatg |
11427 |
T |
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| Q |
118 |
tcggcggcgagctcttaactctcaccaataacattatagcaaggatggcaataagtaaaacatgttctgaaaatgatagtgaagttgaagaaattaggga |
217 |
Q |
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| T |
11426 |
tcggcggcgagctcttaactctcaccaataacattatagcaagaatggcaataagtaaaacatgttctgaaaatgatagtgaagttgaagaaattaggga |
11327 |
T |
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| Q |
218 |
gatgttgaaagacattttagagcttggagggacgtttaatgtgtcagattttatttgggtttgcaagaatttggatttacaaggaatacataaaaggctt |
317 |
Q |
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| T |
11326 |
gatgctgaaggacattttagagcttggagggacgtttaatgtgtcagattttatttgggtttgcaagaatttggatttacaaggaatacataaaaggctt |
11227 |
T |
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| Q |
318 |
aaagttgctatggaaaggtttgacataatgttggagagggctataagggaacatcaagagaaaagaaaggtaaagggtgaaggtgctcatgatagggata |
417 |
Q |
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| T |
11226 |
aaagttgctatggaaaggtttgacataatgttggagagggccataagggaacatcaagagaaaagaaaggtaaagggtgaaggtgctcatgatagggata |
11127 |
T |
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| Q |
418 |
tacttgatat |
427 |
Q |
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| T |
11126 |
tacttgatat |
11117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 427
Target Start/End: Original strand, 18837 - 19196
Alignment:
| Q |
77 |
acttttgcagaagaaaggagaagctggcaacgccgttgatgtcggcggcgagctcttaactctcaccaataacattatagcaaggatggcaataagtaaa |
176 |
Q |
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| T |
18837 |
acttttgcagacaaaaggggaagctcgcgaggctgttaatgttggcggcgagctcttgaatctcacgaatagaatcatcacaactatggcaatgagtaaa |
18936 |
T |
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| Q |
177 |
acatgttctgaaaatgatagtgaagttgaagaaattagggagatgttgaaagacattttagagcttggagggacgtttaatgtgtcagattttatttggg |
276 |
Q |
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| T |
18937 |
acatgtgctgaaaacgatagcgatgtggaagacattaggaagatggtgcaagatagtgtagagctttcagggaggtttaatttgtcggattttatttggt |
19036 |
T |
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| Q |
277 |
tttgcaagaatttggatttacaaggaatacataaaaggcttaaagttgctatggaaaggtttgacataatgttggagagggctataagggaacatcaag- |
375 |
Q |
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||| ||||||| |||| | |||||| | | |||||||||||||| | |||||| |||||||||| | || ||||||||| |||||||| ||||||| |
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| T |
19037 |
tttttaagaattgggatatgcaaggatttaacaaaaggcttaaagtggttatggagaggtttgacacattgatggagagggtgataagggagcatcaagt |
19136 |
T |
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| Q |
376 |
--------agaaaagaaaggtaaagggtgaaggtgctcatgatagggatatacttgatat |
427 |
Q |
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| T |
19137 |
ggaaatgaagaaaaggaaagaaaagggtgaaggtgatcatgttagggatctacttgatat |
19196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 24939738 - 24940044
Alignment:
| Q |
20 |
aagaacacttgatcaattccttcccttgatgcaacaagagtcattgagattcttaaaacttttgcagaagaaaggagaagctggcaacgccgttgatgtc |
119 |
Q |
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|||||| || |||||| | | |||||||| |||||||||| | | ||||| | | ||||||| | |||||||| ||||| || | ||||||||| | |
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| T |
24939738 |
aagaaccctcgatcaacttcgtcccttgaggcaacaagagactctaagatttcttagacttttggataagaaaggggaagccggtgaagccgttgatatt |
24939837 |
T |
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| Q |
120 |
ggcggcgagctcttaactctcaccaataacattatagcaaggatggcaataagtaaaacat---gttctgaaaatgata---gtgaagttgaagaaatta |
213 |
Q |
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| T |
24939838 |
ggcggcgagctgttgactctatccaatagcattataacaaggatgacaatgagaaaaacttttggttctaagaatgatatttgtgaagttaaggacattc |
24939937 |
T |
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| Q |
214 |
gggagatgttgaaagacattttagagcttggagggacgtttaatgtgtcagattttatttgggtttgcaagaatttggatttacaaggaatacataaaag |
313 |
Q |
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| T |
24939938 |
ggaagatggtgacagacactgccgagcttgcagggaagtttaatgtgtcggattttatttggttttgtaagaatttggatttttatggaatgaataaaag |
24940037 |
T |
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| Q |
314 |
gcttaaa |
320 |
Q |
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| T |
24940038 |
gcttaaa |
24940044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 38808930 - 38808845
Alignment:
| Q |
123 |
ggcgagctcttaactctcaccaataacattatagcaaggatggcaataagtaaaacatgttctgaaaatgatagtgaagttgaaga |
208 |
Q |
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| T |
38808930 |
ggcgagctcttgattcacaccaatagaatcataacaaggatgacaatgagtaaaacttgttgtgaaaatgatggtgatgttgaaga |
38808845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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