View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_12 (Length: 445)
Name: NF20408_low_12
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 8725454 - 8725757
Alignment:
| Q |
19 |
cctttaacatactcggtgatgtgagacttattctaagatgtttcattccaatcaattccaacaagtctgtttccatttgtttctgaaccatccattatgg |
118 |
Q |
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| T |
8725454 |
cctttaacatactcggtaatgtgagacttgttctaagatgtttcattccaatcaattccaacaagtctgtttccatttgtttgtgaaccatccattatgg |
8725553 |
T |
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| Q |
119 |
taacatgagtgttgccacatttttgcaatgcagggtgattttattttatggattaggaataaagtacttgaatgaaatgcctaggttgaattagttttgt |
218 |
Q |
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| T |
8725554 |
taacatgagtgttgccacatttttgcaatgcagggtgattttcttttatggattaggaataaagtacttgaatgaaatgcctaggttgaattagttttgt |
8725653 |
T |
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| Q |
219 |
ttgtgaacttatgcatgactcataactgacagtttgatggtgaaatgtgaatctttgatttaaagggacagagaaaacctcctcaagaataatagaaagg |
318 |
Q |
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| T |
8725654 |
ttgtgaacttatgcatgactcataactgacagtttgatggtgaaatgtgaatctttgatttaaagggacagagaaaacctcctcaagaataatagaaagg |
8725753 |
T |
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| Q |
319 |
ggaa |
322 |
Q |
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|||| |
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| T |
8725754 |
ggaa |
8725757 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 42234168 - 42234132
Alignment:
| Q |
34 |
gtgatgtgagacttattctaagatgtttcattccaat |
70 |
Q |
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| T |
42234168 |
gtgatgtgatacttgttctaagatgtttcattccaat |
42234132 |
T |
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