View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20408_low_13 (Length: 431)

Name: NF20408_low_13
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20408_low_13
NF20408_low_13
[»] chr4 (7 HSPs)
chr4 (16-414)||(659287-659693)
chr4 (250-306)||(8187314-8187370)
chr4 (335-380)||(7307762-7307807)
chr4 (337-379)||(570255-570297)
chr4 (324-378)||(1545664-1545718)
chr4 (245-307)||(7226105-7226167)
chr4 (262-306)||(55505328-55505372)
[»] chr6 (1 HSPs)
chr6 (107-402)||(491158-491462)
[»] chr2 (1 HSPs)
chr2 (254-299)||(45245315-45245360)
[»] chr8 (3 HSPs)
chr8 (337-379)||(21235462-21235504)
chr8 (329-369)||(17628177-17628217)
chr8 (251-295)||(32151122-32151166)
[»] chr3 (1 HSPs)
chr3 (254-306)||(514951-515003)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 659287 - 659693
Alignment:
Q  16 atcaatgaaaataataagatttaaaactacatataaacccaattgcttgcattggataataacttcaacaattatcatgaactaatgagtcaatacacaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  659287 atcaatgaaaataataagatttaaaactacatataaacccaattgcttgcattggataataacttcaacaattatcatgaactaatgagtcaatacacaa 659386  T
Q  116 atttattttacaaagtaatttagaaaacaaaatgccttacatttcagaattgaaacttcagcaaggcagtttcagaaaac-----aat--gccatacatc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     |||  | ||||||||    
T  659387 atttattttacaaagtaatttagaaaacaaaatgccttacatttcagaattgaaacttcagcaaggcagtttcagaatactagaaaataaggcatacatc 659486  T
Q  209 actcaagaaaaattgcttatcttgctctcggatacgatagtaaggtggaacaattatctttttcaacgatggccttgaaaataccatcgaggcaacaatg 308  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  659487 actcaagaaaaattccttatcttgctctcggatacgatagtaaggtggaacaattatctttttcaacgatggccttgaaaataccatcgaggcaacaatg 659586  T
Q  309 tcgtcatcgttcacattatcacaacccctcaaattgatctccctcagctgcgtgcagttttctaccgcatgcattactcccttacctgttata-cacgac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  659587 tcgtcatcgttcacattatcacaacccctcaaattgatctccctcagctgcgtgcagttttctaccgcatgcattactcccttacctgttataccacgac 659686  T
Q  408 agctttc 414  Q
    |||||||    
T  659687 agctttc 659693  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 8187370 - 8187314
Alignment:
Q  250 aaggtggaacaattatctttttcaacgatggccttgaaaataccatcgaggcaacaa 306  Q
    ||||||| |||||||||||| ||| ||||||||||||||||| ||||||| ||||||    
T  8187370 aaggtgggacaattatctttctcagcgatggccttgaaaatatcatcgagtcaacaa 8187314  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 7307762 - 7307807
Alignment:
Q  335 cctcaaattgatctccctcagctgcgtgcagttttctaccgcatgc 380  Q
    |||||||||||| |||||||| |||||||||||||||||| |||||    
T  7307762 cctcaaattgatttccctcagttgcgtgcagttttctaccacatgc 7307807  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 570255 - 570297
Alignment:
Q  337 tcaaattgatctccctcagctgcgtgcagttttctaccgcatg 379  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
T  570255 tcaaattgatctccctcagttgtgtgcagttttctaccacatg 570297  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 1545664 - 1545718
Alignment:
Q  324 ttatcacaacccctcaaattgatctccctcagctgcgtgcagttttctaccgcat 378  Q
    |||||||||||||||||||||||| | || || || |||||||||| ||||||||    
T  1545664 ttatcacaacccctcaaattgatcactcttagttgtgtgcagttttttaccgcat 1545718  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 7226167 - 7226105
Alignment:
Q  245 atagtaaggtggaacaattatctttttcaacgatggccttgaaaataccatcgaggcaacaat 307  Q
    |||| |||| ||| ||||||||||| |||| |||||||||||| | ||||| |||||||||||    
T  7226167 atagcaaggaggagcaattatctttctcaatgatggccttgaagaaaccattgaggcaacaat 7226105  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 55505372 - 55505328
Alignment:
Q  262 ttatctttttcaacgatggccttgaaaataccatcgaggcaacaa 306  Q
    |||||||| |||| |||||||||||||||||||| ||| ||||||    
T  55505372 ttatctttctcaatgatggccttgaaaataccattgagtcaacaa 55505328  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 107 - 402
Target Start/End: Original strand, 491158 - 491462
Alignment:
Q  107 aatacacaaatttattttacaaagtaatttagaaaacaaaatgccttacatttcagaattgaaacttcagcaag----gcagtttcagaaaac------- 195  Q
    |||||||||||||||| ||||||| ||||| ||||||| || | ||||||||| |||||| |||||||||| ||    |||||||||||| ||           
T  491158 aatacacaaatttattctacaaaggaatttcgaaaacataacgtcttacattttagaatttaaacttcagccagcaaagcagtttcagaatactagcgaa 491257  T
Q  196 -aatgccatacatcactcaagaaaaattgcttatcttgctctcgg-atacgatagtaaggtggaacaattatctttttcaacgatggccttgaaaatacc 293  Q
     || ||| ||||| |||||||||   || |||||| | ||| ||| | |||| ||| ||||||||||||||||||| | || |||| ||| ||| |||||    
T  491258 gaaggcc-tacatgactcaagaagttttccttatcattctcgcgggaaacgaaagttaggtggaacaattatctttcttaatgatgacctagaagatacc 491356  T
Q  294 atcgaggcaacaatgtcgtcatcgttcacattatcacaacccctcaaattgatctccctcagctgcgtgcagttttctaccgcatgcattactcccttac 393  Q
    || || |||||||||||   ||| |||||  ||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  491357 attgaagcaacaatgtc---atctttcactctataacagcccctcaaattgatctctctcagctgcgtgcagttttctacagcatgcatcactcccttac 491453  T
Q  394 ctgttatac 402  Q
    |||| ||||    
T  491454 ctgtgatac 491462  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 45245360 - 45245315
Alignment:
Q  254 tggaacaattatctttttcaacgatggccttgaaaataccatcgag 299  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  45245360 tggaacatttatctttttcaacgatggccttgaaaataccatcgag 45245315  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 21235462 - 21235504
Alignment:
Q  337 tcaaattgatctccctcagctgcgtgcagttttctaccgcatg 379  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
T  21235462 tcaaattgatctccctcagttgtgtgcagttttctaccacatg 21235504  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 17628217 - 17628177
Alignment:
Q  329 acaacccctcaaattgatctccctcagctgcgtgcagtttt 369  Q
    ||||||||| ||| |||||||||||||||| ||||||||||    
T  17628217 acaaccccttaaactgatctccctcagctgtgtgcagtttt 17628177  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 32151122 - 32151166
Alignment:
Q  251 aggtggaacaattatctttttcaacgatggccttgaaaataccat 295  Q
    ||||||| || |||||||| |||| ||||||||||||||||||||    
T  32151122 aggtggagcagttatctttctcaatgatggccttgaaaataccat 32151166  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 515003 - 514951
Alignment:
Q  254 tggaacaattatctttttcaacgatggccttgaaaataccatcgaggcaacaa 306  Q
    |||| ||| ||||||| |||| |||||||||||||||||||| | ||||||||    
T  515003 tggagcaactatctttctcaatgatggccttgaaaataccattggggcaacaa 514951  T

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