View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20408_low_16 (Length: 421)

Name: NF20408_low_16
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20408_low_16
NF20408_low_16
[»] chr1 (2 HSPs)
chr1 (1-405)||(22054429-22054833)
chr1 (222-372)||(22064243-22064393)
[»] scaffold0244 (1 HSPs)
scaffold0244 (5-362)||(6925-7282)
[»] chr2 (1 HSPs)
chr2 (234-285)||(824330-824381)
[»] chr5 (1 HSPs)
chr5 (249-317)||(35766326-35766394)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 22054833 - 22054429
Alignment:
Q  1 gacagagacaaagatactcgagtctgcgctcaacaacatggttgacccatttgacgatactaggaatgctgagatgagcaagattagggttaccgtaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||       
T  22054833 gacagagacaaagatactcgagtctgcgctcaacaacatggttgacccatttgacgatactgggaatgctgagatgagcaagattagggttaccatattg 22054734  T
Q  101 aatttctaggcagaaactattgatgaaatgagaaaaaacagcgtctcgagaggccaaaacggagtccacaaattgaagaaaacgggaataagattcgtcg 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  22054733 aatttcaaggcagaaactattgatgaaatgagaaaaaacagcgtctcgagaggccaaaacggagttcacaaattgaataaaacgggaattagattcgtcg 22054634  T
Q  201 ctattcaatatgatgttggtgaagtcgatcttaggaacaaagtgacatagatgagtccatcttttggacaaaatacttgtggcaaatgcctctttggttg 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22054633 ctattcactatgatgttggtgaagtcgatcttaggaacaaagtgacatagatgagtccatcttttggacaaaatacttgtggcaaatgcctctttggttg 22054534  T
Q  301 tgagtaaagagagaatggagaagatgatgatattgtcaggtaagttcctgataatatccatcggcaccgccgtatttttcgcacaattattaggttaggg 400  Q
    | ||||||||||||||| |||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22054533 taagtaaagagagaatgcagaagacgatgatattgtcgggtaagttactgatcatatccatcggcaccgccgtatttttcgcacaattattaggttaggg 22054434  T
Q  401 cttgc 405  Q
    |||||    
T  22054433 cttgc 22054429  T

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Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 222 - 372
Target Start/End: Complemental strand, 22064393 - 22064243
Alignment:
Q  222 aagtcgatcttaggaacaaagtgacatagatgagtccatcttttggacaaaatacttgtggcaaatgcctctttggttgtgagtaaagagagaatggaga 321  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |||    
T  22064393 aagttgatctcagggacaaagtgacatagatgagtccatcttttggacaaaatgcttgtggaaactgcctctttggttgtgagtaaagagagaatgcaga 22064294  T
Q  322 agatgatgatattgtcaggtaagttcctgataatatccatcggcaccgccg 372  Q
    |||||||||||||||||| |||| | ||||| |||||||||||||||||||    
T  22064293 agatgatgatattgtcagctaagctactgatcatatccatcggcaccgccg 22064243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 362
Target Start/End: Original strand, 6925 - 7282
Alignment:
Q  5 gagacaaagatactcgagtctgcgctcaacaacatggttgacccatttgacgatactaggaatgctgagatgagcaagattagggttaccgtaaaaaatt 104  Q
    ||||| ||||||||||| |||||||| |||||||||||||| ||||| ||  ||| | |||| || ||||| |||||||||||||||||| ||   |||     
T  6925 gagacgaagatactcgactctgcgctgaacaacatggttgatccattcgaaaatattgggaaagccgagataagcaagattagggttaccatatttaatg 7024  T
Q  105 tctaggcagaaactattgatgaaatgagaaaaaacagcgtctcgagaggccaaaacggagtccacaaattgaagaaaacgggaataagattcgtcgctat 204  Q
    || |||| |||||||| ||||||||||| |||||| || |||| ||||| |||||||||||  |||||||    ||||| ||||| |||||||| |||||    
T  7025 tcgaggctgaaactatcgatgaaatgaggaaaaacggcatctccagaggacaaaacggagtaaacaaatttgttaaaactggaattagattcgtagctat 7124  T
Q  205 tcaatatgatgttggtgaagtcgatcttaggaacaaagtgacatagatgagtccatcttttggacaaaatacttgtggcaaatgcctctttggttgtgag 304  Q
    ||| |  |||||| ||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |  ||||||||||| ||||     
T  7125 tcactgagatgttagtgaagtcgattttcggaacaaagtgacatagattagtccatctcttggacaaaatgcttgtggctaccgcctctttggtggtgac 7224  T
Q  305 taaagagagaatggagaagatgatgatattgtcaggtaagttcctgataatatccatc 362  Q
    ||| | ||||||| ||||||||||||||| |||||||||||| ||||| |||||||||    
T  7225 taatgggagaatgcagaagatgatgatatcgtcaggtaagttactgatcatatccatc 7282  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 824381 - 824330
Alignment:
Q  234 ggaacaaagtgacatagatgagtccatcttttggacaaaatacttgtggcaa 285  Q
    |||||| |||| ||||||||||||||||| |||||||||| |||||| ||||    
T  824381 ggaacatagtgccatagatgagtccatctcttggacaaaacacttgttgcaa 824330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 35766394 - 35766326
Alignment:
Q  249 agatgagtccatcttttggacaaaatacttgtggcaaatgcctctttggttgtgagtaaagagagaatg 317  Q
    |||||||||||||| ||||||||||  ||||||||||  ||||||| ||| | ||  ||||||||||||    
T  35766394 agatgagtccatctcttggacaaaacgcttgtggcaacggcctcttgggtggagacaaaagagagaatg 35766326  T

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