View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20408_low_18 (Length: 418)

Name: NF20408_low_18
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20408_low_18
NF20408_low_18
[»] chr1 (18 HSPs)
chr1 (13-404)||(52871707-52872091)
chr1 (110-183)||(50945848-50945921)
chr1 (113-170)||(9848514-9848571)
chr1 (110-171)||(12174488-12174549)
chr1 (110-179)||(37719578-37719646)
chr1 (81-142)||(41103582-41103643)
chr1 (139-179)||(33218557-33218597)
chr1 (126-170)||(42470278-42470322)
chr1 (123-182)||(27322963-27323022)
chr1 (124-163)||(50990450-50990489)
chr1 (126-180)||(1146652-1146706)
chr1 (110-184)||(35633153-35633227)
chr1 (130-179)||(10427857-10427906)
chr1 (115-164)||(19622603-19622652)
chr1 (110-179)||(36564270-36564339)
chr1 (138-183)||(49303677-49303722)
chr1 (90-170)||(6732047-6732126)
chr1 (110-170)||(31239222-31239282)
[»] chr5 (19 HSPs)
chr5 (110-183)||(40693125-40693198)
chr5 (139-182)||(14525665-14525708)
chr5 (110-182)||(10242573-10242645)
chr5 (126-181)||(7123625-7123680)
chr5 (90-168)||(33857934-33858012)
chr5 (90-179)||(5856249-5856338)
chr5 (110-182)||(39065722-39065794)
chr5 (122-170)||(40293170-40293218)
chr5 (110-170)||(41863888-41863948)
chr5 (90-182)||(1578674-1578766)
chr5 (90-182)||(1606049-1606141)
chr5 (110-170)||(3944997-3945057)
chr5 (111-183)||(4460644-4460716)
chr5 (114-182)||(43397591-43397659)
chr5 (122-181)||(14930542-14930601)
chr5 (87-170)||(33761426-33761509)
chr5 (110-180)||(8545177-8545247)
chr5 (90-179)||(23085103-23085191)
chr5 (109-162)||(43222461-43222514)
[»] chr3 (14 HSPs)
chr3 (41-182)||(1148856-1148997)
chr3 (86-183)||(47410325-47410422)
chr3 (109-162)||(34876158-34876211)
chr3 (110-170)||(53995102-53995162)
chr3 (107-177)||(50098299-50098369)
chr3 (122-182)||(32758172-32758232)
chr3 (138-182)||(32797446-32797490)
chr3 (135-183)||(54114498-54114546)
chr3 (125-170)||(51103006-51103051)
chr3 (111-183)||(3503891-3503963)
chr3 (96-164)||(13867328-13867396)
chr3 (117-177)||(27399668-27399728)
chr3 (90-170)||(34995333-34995413)
chr3 (90-170)||(39198986-39199066)
[»] chr7 (15 HSPs)
chr7 (71-183)||(20245120-20245233)
chr7 (71-183)||(20249158-20249271)
chr7 (86-182)||(24862594-24862690)
chr7 (26-182)||(10039795-10039957)
chr7 (110-169)||(37030898-37030957)
chr7 (86-164)||(32310885-32310962)
chr7 (50-142)||(42180545-42180637)
chr7 (110-179)||(1441725-1441793)
chr7 (154-183)||(5319085-5319114)
chr7 (71-144)||(20233806-20233879)
chr7 (110-171)||(36924416-36924476)
chr7 (71-183)||(20265684-20265796)
chr7 (110-170)||(27425504-27425564)
chr7 (90-182)||(47293413-47293504)
chr7 (122-170)||(47437681-47437729)
[»] chr4 (10 HSPs)
chr4 (86-173)||(47806361-47806449)
chr4 (26-133)||(28513560-28513667)
chr4 (123-171)||(2765894-2765942)
chr4 (110-183)||(37442675-37442748)
chr4 (122-179)||(4505949-4506006)
chr4 (110-183)||(24911209-24911281)
chr4 (129-170)||(39678300-39678341)
chr4 (122-179)||(42906298-42906355)
chr4 (110-163)||(43028070-43028123)
chr4 (155-183)||(12520520-12520548)
[»] chr8 (20 HSPs)
chr8 (110-163)||(3513582-3513635)
chr8 (26-119)||(41372598-41372691)
chr8 (74-182)||(7576669-7576776)
chr8 (135-182)||(11911884-11911931)
chr8 (110-168)||(29767020-29767078)
chr8 (110-183)||(8137453-8137526)
chr8 (143-175)||(1356677-1356709)
chr8 (126-182)||(9270638-9270694)
chr8 (122-172)||(1351852-1351903)
chr8 (121-183)||(32411093-32411156)
chr8 (146-188)||(3541392-3541434)
chr8 (90-164)||(29773211-29773285)
chr8 (122-168)||(34151261-34151307)
chr8 (125-182)||(3914230-3914287)
chr8 (126-163)||(6235350-6235387)
chr8 (122-171)||(40722358-40722407)
chr8 (90-175)||(45521631-45521716)
chr8 (110-182)||(3541011-3541083)
chr8 (135-171)||(38457116-38457152)
chr8 (90-170)||(45537612-45537692)
[»] chr2 (10 HSPs)
chr2 (110-179)||(25637079-25637148)
chr2 (85-170)||(38502380-38502465)
chr2 (71-183)||(7302353-7302465)
chr2 (110-171)||(2001351-2001413)
chr2 (117-179)||(40859960-40860022)
chr2 (110-163)||(8785360-8785413)
chr2 (138-179)||(32216994-32217035)
chr2 (51-144)||(33228301-33228394)
chr2 (122-179)||(35155932-35155989)
chr2 (74-182)||(41635853-41635961)
[»] scaffold0020 (1 HSPs)
scaffold0020 (93-160)||(167553-167620)
[»] chr6 (3 HSPs)
chr6 (122-181)||(12808565-12808624)
chr6 (122-179)||(9155319-9155375)
chr6 (126-183)||(32570241-32570297)
[»] scaffold0157 (1 HSPs)
scaffold0157 (155-183)||(369-397)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 52872091 - 52871707
Alignment:
Q  13 ttctggggttttatatattgttggggttattaaaaaagataaatatgatttggtacggtatgaaagtttaaaatatttatacctatagtttcattccaaa 112  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52872091 ttctgaggttttctatattgttggg-ttattaaaaaagataaatatgatttggtacggtatgaaagtttaaaatatttatatctatagtttcattccaaa 52871993  T
Q  113 tcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaagttgagtcatacgaacacaaaaactatacc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  52871992 tcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaagttgagtcataagaacacaaaaactatagc 52871893  T
Q  213 gataattaatagtaataagacttcaaccatgcatgaattagacaaaccattcctaacacaaagaaacacagtataaaaatcacaataaggaaacatagat 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52871892 aataattaatagtaataagacttcaaccatgcatgaattagacaaaccattcctaacacaaagaaacacagtataaaaatcacaataaggaaacatagat 52871793  T
Q  313 aaaaaaccaaacttgtatcatacaaccaaaattaaaatcgattgaagataacaacaattgcaaagaaatgaaattgacatgacgctataagt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |       ||||||||||||||||||||||||    
T  52871792 aaaaaaccaaacttgtatcatacaaccaaaattaaaatcgattgaagataacagcaatttc------ttgaaattgacatgacgctataagt 52871707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 50945848 - 50945921
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    ||||||||||| ||||| |||||| |||||||||| |||||||  ||| |||||||||||||||||||||||||    
T  50945848 aaatcaaaataattttagtcaaaattttataaaaactattgttcttaagttatacgcattaacacaataaaaag 50945921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 9848514 - 9848571
Alignment:
Q  113 tcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||    
T  9848514 tcaaaataattttaatcaaaatttcataaaaattattgtttgtaatttatgcgcatta 9848571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 12174549 - 12174488
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaa 171  Q
    ||||||||||| |||||||||||| || ||||||| |||||||  |||||||||||| ||||    
T  12174549 aaatcaaaataattttaatcaaaatttgataaaaactattgttcataatttatacgcgttaa 12174488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 37719646 - 37719578
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    ||||||||||||||||||| |||  ||||||||||  |||||| ||||||||||| ||||||| ||||||    
T  37719646 aaatcaaaatatttttaattaaat-tttataaaaaaaattgttcgtaatttatactcattaacgcaataa 37719578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 41103582 - 41103643
Alignment:
Q  81 taaaatatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaa 142  Q
    ||||||||||||||||||| ||| | || ||||||||||  |||||||||||| ||||||||    
T  41103582 taaaatatttatacctataattttaatcaaaatcaaaattattttaatcaaaattttataaa 41103643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 33218557 - 33218597
Alignment:
Q  139 taaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  33218557 taaaaattatcgtttgtaatttatacgcattaacataataa 33218597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 42470322 - 42470278
Alignment:
Q  126 aatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||||||| || |||||||||||||||||||||||| ||||||||    
T  42470322 aatcaaaatttcataaaaattattgtttgtaatttaaacgcatta 42470278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 27322963 - 27323022
Alignment:
Q  123 tttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    ||||||||||| || |||||||||| |||| |||||||||   |||||||||||||||||    
T  27322963 tttaatcaaaatttcataaaaattactgttcgtaatttatgttcattaacacaataaaaa 27323022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 50990489 - 50990450
Alignment:
Q  124 ttaatcaaaactttataaaaattattgtttgtaatttata 163  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  50990489 ttaatcaaaacttcataaaaattattgtttgtaagttata 50990450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 1146652 - 1146706
Alignment:
Q  126 aatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaa 180  Q
    |||||||| |||||||||| ||| ||| ||||||||||||||||| ||| |||||    
T  1146652 aatcaaaattttataaaaactatcgttggtaatttatacgcattagcacgataaa 1146706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 35633153 - 35633227
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaagt 184  Q
    |||| ||||||||||||||||||  || ||||||| |||| || ||||||| ||||||||| |  ||||||||||    
T  35633153 aaataaaaatatttttaatcaaattttcataaaaaatattattcgtaatttttacgcattagcgtaataaaaagt 35633227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 10427906 - 10427857
Alignment:
Q  130 aaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||| ||||||||||||||| ||| ||||||||||||||| || ||||||    
T  10427906 aaaaatttataaaaattattatttataatttatacgcattgacgcaataa 10427857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 19622652 - 19622603
Alignment:
Q  115 aaaatatttttaatcaaaactttataaaaattattgtttgtaatttatac 164  Q
    |||||| | |||||||||| || ||||||| |||||||||||||||||||    
T  19622652 aaaataatattaatcaaaatttcataaaaaatattgtttgtaatttatac 19622603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 36564270 - 36564339
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    ||||||||||  |||||||||||| ||||| ||||| ||||||  ||||||||||| |||| | ||||||    
T  36564270 aaatcaaaatggttttaatcaaaattttatgaaaataattgttcataatttatacgtattagcccaataa 36564339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 49303722 - 49303677
Alignment:
Q  138 ataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    ||||||| ||||||| || |||||||||||||||| ||||||||||    
T  49303722 ataaaaaatattgttagtcatttatacgcattaacgcaataaaaag 49303677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 6732126 - 6732047
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    ||||||| || ||| |||| ||||||||||| |||||||||||| || || |||| |||| |||||||||| || ||||||    
T  6732126 tatacctctaattttattcaaaatcaaaataattttaatcaaaatttcat-aaaactattatttgtaatttgtaggcatta 6732047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 31239222 - 31239282
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    ||||||||||  |||||||||||| |  ||||||| |||| |||||||||||||| |||||    
T  31239222 aaatcaaaattattttaatcaaaattccataaaaaatattatttgtaatttatacacatta 31239282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 40693198 - 40693125
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    ||||||||||| |||||||||||| || ||||||| ||||||| |||||||||| |||||||||||||||||||    
T  40693198 aaatcaaaataattttaatcaaaatttcataaaaaatattgttcgtaatttatatgcattaacacaataaaaag 40693125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 14525708 - 14525665
Alignment:
Q  139 taaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14525708 taaaaattattgtttgtaatttatacgcattaacacaataaaaa 14525665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 10242573 - 10242645
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    ||||||||||| ||||||| |||| |||| ||||| |||||||||||||||||| ||||||||  ||||||||    
T  10242573 aaatcaaaataattttaattaaaaatttagaaaaaatattgtttgtaatttatatgcattaacgtaataaaaa 10242645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 7123680 - 7123625
Alignment:
Q  126 aatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaa 181  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  7123680 aatcaaaattttataaaaattattgttcgtaatttatacacattaacgcaataaaa 7123625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 33857934 - 33858012
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcat 168  Q
    |||||||||| ||| | || ||||||||||| ||||||||| || || ||||||||||||||| |||||| ||||||||    
T  33857934 tatacctataattttaatcaaaatcaaaataattttaatcataatttcataaaaattattgttcgtaattaatacgcat 33858012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 5856338 - 5856249
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||||||||| ||| | || |||||||| || | || ||||||| |||||||||| ||||||||||||||||||| ||||| | ||||||    
T  5856338 tatacctataattttaatcaaaatcaaattaatcttgatcaaaattttataaaaactattgtttgtaatttatactcattagcgcaataa 5856249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 39065722 - 39065794
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    ||||||||||| ||||||  |||  || |||||||||| |||| ||||||||||||||||| |||||||||||    
T  39065722 aaatcaaaataattttaacgaaattttcataaaaattaatgttcgtaatttatacgcattagcacaataaaaa 39065794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 40293170 - 40293218
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||    
T  40293170 ttttaatcaaaatttcataaaaattattgtttgtaatttatatgcatta 40293218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 41863948 - 41863888
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    ||||||||||| | |||||||||| || ||||||||||||||| |||||||||| ||||||    
T  41863948 aaatcaaaataatattaatcaaaatttcataaaaattattgttcgtaatttataagcatta 41863888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 1578766 - 1578674
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||||||||| ||| || | || |||| |||  ||||||||||| || |||||||||| |||| |||| ||||||||||||  ||||||||||    
T  1578766 tatacctataattttatccaaattcaagataaatttaatcaaaatttcataaaaattaatgttcgtaaattatacgcattatgacaataaaaa 1578674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 1606049 - 1606141
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||||||||| ||| || | || |||| |||  ||||||||||| || |||||||||| |||| |||| ||||||||||||  ||||||||||    
T  1606049 tatacctataattttatccaaattcaagataaatttaatcaaaatttcataaaaattaatgttcgtaaattatacgcattatgacaataaaaa 1606141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 3945057 - 3944997
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    ||||||||||| |||||||||||| || ||||||| ||||||| |||| |||||| |||||    
T  3945057 aaatcaaaataattttaatcaaaatttcataaaaactattgttcgtaacttatacacatta 3944997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 4460644 - 4460716
Alignment:
Q  111 aatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    ||||||| || ||| |||||||| || |||||||  ||||||||||||||||||| |||| | ||||||||||    
T  4460644 aatcaaagtaatttcaatcaaaatttcataaaaacaattgtttgtaatttatacgaattagcgcaataaaaag 4460716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 43397659 - 43397591
Alignment:
Q  114 caaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    ||||||| |||||||||||| || ||||||| ||||||| ||||||| ||| ||||||  |||||||||    
T  43397659 caaaataattttaatcaaaatttcataaaaaatattgttagtaatttttacacattaatgcaataaaaa 43397591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 14930542 - 14930601
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaa 181  Q
    |||||||||||| ||||||||| ||||||||  ||||||||||  |||||| ||||||||    
T  14930542 ttttaatcaaaattttataaaagttattgttcataatttatacatattaacgcaataaaa 14930601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 33761426 - 33761509
Alignment:
Q  87 atttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    ||||||||||||| ||| | || ||||||||||| ||||||| |||| || ||||||  |||| || |||||| ||||||||||    
T  33761426 atttatacctataattttaatcaaaatcaaaataattttaattaaaatttcataaaagctatttttcgtaattaatacgcatta 33761509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 8545177 - 8545247
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaa 180  Q
    |||||||| || |||||||||||| || ||||||| ||| |||| || |||| |||||||| |||||||||    
T  8545177 aaatcaaattaattttaatcaaaatttcataaaaactatcgtttatagtttacacgcattatcacaataaa 8545247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 23085191 - 23085103
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||| ||||| ||| | ||||||| |||||| |||||||| ||| || ||| |||  |||||| |||||||||||||||||| |||||||    
T  23085191 tatagctataattttaatccaaattaaaataattttaatctaaatttcatataaaa-attgttcgtaatttatacgcattaatacaataa 23085103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 43222461 - 43222514
Alignment:
Q  109 caaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttat 162  Q
    ||||||||| || |||||||||||  || ||||||| |||||||||||||||||    
T  43222461 caaatcaaattaattttaatcaaagtttcataaaaactattgtttgtaatttat 43222514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 182
Target Start/End: Original strand, 1148856 - 1148997
Alignment:
Q  41 attaaaaaagataaatatgatttggtacggtatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttata 140  Q
    |||||||||||||| |||  ||||  ||  ||| |||||  ||||||| ||||| |||| ||| | || ||||||||||| | |||||||||| || |||    
T  1148856 attaaaaaagataattatagtttgtcacaatatcaaagtgcaaaatatctatacttataattttaatcaaaatcaaaataatgttaatcaaaatttcata 1148955  T
Q  141 aaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||| ||||||| || |||||||||||||||||||| |||||    
T  1148956 aaaactattgttcgtgatttatacgcattaacacaaaaaaaa 1148997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 47410422 - 47410325
Alignment:
Q  86 tatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    |||||||||||||| ||| | || |||| |||||| ||| |||||||| || ||||||||||||||| ||||||||||| ||||||| ||||| ||||    
T  47410422 tatttatacctataattttaatcaaaattaaaataatttcaatcaaaatttcataaaaattattgttcgtaatttatacacattaacgcaatataaag 47410325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 34876158 - 34876211
Alignment:
Q  109 caaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttat 162  Q
    |||||||||||| |||||||||||| |||||||||||||||||| |||||||||    
T  34876158 caaatcaaaataattttaatcaaaattttataaaaattattgttcgtaatttat 34876211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 53995162 - 53995102
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    ||||||||||| |||||||||||| || ||||||| || ||||||||||||||||||||||    
T  53995162 aaatcaaaataattttaatcaaaatttcataaaaactactgtttgtaatttatacgcatta 53995102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 50098369 - 50098299
Alignment:
Q  107 tccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaat 177  Q
    |||||||||||||| ||||| |||||| || ||| ||| |||||||| |||||||||||||||||| ||||    
T  50098369 tccaaatcaaaataattttattcaaaatttcatataaactattgtttataatttatacgcattaacgcaat 50098299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 32758232 - 32758172
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||||||||||| || ||||||| |||||||| ||||||||| |||||| | |||||||||    
T  32758232 ttttaatcaaaatttcataaaaaatattgtttataatttatatgcattagcgcaataaaaa 32758172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 32797446 - 32797490
Alignment:
Q  138 ataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  32797446 ataaaaattattgttcgtaatttatacacattagcacaataaaaa 32797490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 54114498 - 54114546
Alignment:
Q  135 tttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    |||||||||||||||||| |||||||||| |||||| | ||||||||||    
T  54114498 tttataaaaattattgttcgtaatttatatgcattagcgcaataaaaag 54114546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 51103051 - 51103006
Alignment:
Q  125 taatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    ||||||||| ||||||||||||||||||  |||||||||| |||||    
T  51103051 taatcaaaattttataaaaattattgttcataatttatacacatta 51103006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 3503963 - 3503891
Alignment:
Q  111 aatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    |||||||||| ||||||| ||||  | ||||||| || ||||  || ||||||||||||| ||||||||||||    
T  3503963 aatcaaaataattttaataaaaatctcataaaaactaatgttcatagtttatacgcattatcacaataaaaag 3503891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 13867328 - 13867396
Alignment:
Q  96 tatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatac 164  Q
    |||| ||||| || |||| |||||| |||||||||||| |||| ||||| |||||||  ||||||||||    
T  13867328 tataatttcaatcaaaatgaaaataattttaatcaaaattttagaaaaaatattgttcataatttatac 13867396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 27399668 - 27399728
Alignment:
Q  117 aatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaat 177  Q
    |||| |||||||||||  |||||||||||||||||| |||| ||||| | |||| ||||||    
T  27399668 aataattttaatcaaacttttataaaaattattgttggtaacttatatgtattagcacaat 27399728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 34995413 - 34995333
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||||||||| ||| | || |||||||| || |||||||||||| || ||||||  |||||||  |||||||||| |||||    
T  34995413 tatacctataattttaatcaaaatcaaattaattttaatcaaaatttcataaaagctattgttcataatttatacccatta 34995333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 39199066 - 39198986
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||||||||| ||| | || ||||||||||| ||||||||||||  | ||||||| ||  ||| ||||||||||| |||||    
T  39199066 tatacctataattttaatcaaaatcaaaataattttaatcaaaatgtcataaaaactaccgttcgtaatttatactcatta 39198986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 20245120 - 20245233
Alignment:
Q  71 tatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaat-atttttaatcaaaactttataaaaattattgtttgtaatttatacgcatt 169  Q
    |||||||||  ||||||| |||||||||| ||| | || |||||||||  | |||||||||||| |  ||||||| |||| |||||||||||||||||||    
T  20245120 tatgaaagtgcaaaatatctatacctataattttaatcaaaatcaaaaacaattttaatcaaaattccataaaaaatattatttgtaatttatacgcatt 20245219  T
Q  170 aacacaataaaaag 183  Q
    |||  |||||||||    
T  20245220 aacgaaataaaaag 20245233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 20249158 - 20249271
Alignment:
Q  71 tatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaat-atttttaatcaaaactttataaaaattattgtttgtaatttatacgcatt 169  Q
    |||||||||  ||||||| |||||||||| ||| | || |||||||||  | |||||||||||| |  ||||||| |||| |||||||||||||||||||    
T  20249158 tatgaaagtgcaaaatatctatacctataattttaatcaaaatcaaaaacaattttaatcaaaattccataaaaaatattatttgtaatttatacgcatt 20249257  T
Q  170 aacacaataaaaag 183  Q
    |||  |||||||||    
T  20249258 aacgaaataaaaag 20249271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 24862594 - 24862690
Alignment:
Q  86 tatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||||||||||||| ||| | || ||||| ||  | ||||||| |||| |||||||||| |||||||| |||||||||| |||||||| ||||||||    
T  24862594 tatttatacctataattttaatcaaaatcgaatcaattttaattaaaattttataaaaactattgtttataatttatacacattaacagaataaaaa 24862690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 10039957 - 10039795
Alignment:
Q  26 tatattgttggggttattaaaaaagataaatatgatttggtacggtatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaatattttt 125  Q
    ||||||||||| || ||| |||||||||||||| ||||| |||  ||||||| |  ||||||| |||||||||| ||| |  | ||||||||||| |||     
T  10039957 tatattgttggtgtcattgaaaaagataaatataatttgttacaatatgaaattgcaaaatatgtatacctataattttaaccaaaatcaaaataattta 10039858  T
Q  126 aatcaaaac------tttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||||||||      || |||||  ||| ||||||||||||||||||| ||  ||||||||||    
T  10039857 aatcaaaaccagagtttcataaattttaatgtttgtaatttatacgcagtactacaataaaaa 10039795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 37030957 - 37030898
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatt 169  Q
    |||||||| || |||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  37030957 aaatcaaattaattttaatcaaaattttataaaaattatggttcgtaatttatacgcatt 37030898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 32310885 - 32310962
Alignment:
Q  86 tatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatac 164  Q
    |||||||||||||||||| | || ||||| ||||| |||||||||||| || ||||||| ||||||| ||| |||||||    
T  32310885 tatttatacctatagttttaatcaaaatcgaaataattttaatcaaaatttcataaaaa-tattgttagtagtttatac 32310962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 42180637 - 42180545
Alignment:
Q  50 gataaatatgatttggtacggtatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaa 142  Q
    ||||||||||||||| || | |||||||||  || |||||||||| |||| ||| | |  ||||||||||| |||||||| ||| ||||||||    
T  42180637 gataaatatgatttgttatgatatgaaagtggaagatatttatacttatacttttaattaaaatcaaaataattttaatctaaattttataaa 42180545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 1441725 - 1441793
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||||||| || |||||||||||| || |||||| | |||||| ||||||||||||||||| | ||||||    
T  1441725 aaatcaaattaattttaatcaaaatttcataaaact-attgttcgtaatttatacgcattagcgcaataa 1441793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 5319114 - 5319085
Alignment:
Q  154 gtaatttatacgcattaacacaataaaaag 183  Q
    ||||||||||||||||||||||||||||||    
T  5319114 gtaatttatacgcattaacacaataaaaag 5319085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 20233806 - 20233879
Alignment:
Q  71 tatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaa 144  Q
    ||||||||| |||||||| |||||||| | ||| | || ||||||||||| ||||||||| || |||| |||||    
T  20233806 tatgaaagtgtaaaatatctatacctacaattttaatcaaaatcaaaataattttaatcagaattttacaaaaa 20233879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 36924476 - 36924416
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaa 171  Q
    |||| |||||| |||||||||||| || ||||||| |||| ||| |||||||||||||||||    
T  36924476 aaatgaaaataattttaatcaaaatttcataaaaa-tattatttataatttatacgcattaa 36924416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 20265684 - 20265796
Alignment:
Q  71 tatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||||||||  ||||||| ||||| |||| ||| | || |||| |||| | |||| ||||||| |  ||||||| ||  |||||||||||| ||||||||    
T  20265684 tatgaaagtgcaaaatatctatacttatacttttaatcaaaatgaaaacaattttcatcaaaattccataaaaaatacggtttgtaatttacacgcatta 20265783  T
Q  171 acacaataaaaag 183  Q
    ||  |||||||||    
T  20265784 acgaaataaaaag 20265796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 27425564 - 27425504
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    ||||| ||||| ||||||||||||  | ||||||| |||| || |||||||||||||||||    
T  27425564 aaatctaaataattttaatcaaaagatcataaaaactatttttagtaatttatacgcatta 27425504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 47293504 - 47293413
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||||||||| ||| | ||  |||||||||| ||||||| |||| | ||| |||| |||| ||  |||||||||||||||||| |||||||||    
T  47293504 tatacctataattttaatcacaatcaaaataattttaataaaaaatgtattaaaaatatt-ttcataatttatacgcattaacgcaataaaaa 47293413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 47437729 - 47437681
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||||||||| | |||||||||||||||| |||| | ||||||||||||    
T  47437729 ttttaatcaacattttataaaaattattggttgtgacttatacgcatta 47437681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 47806449 - 47806361
Alignment:
Q  86 tatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaa-tttatacgcattaaca 173  Q
    |||||||||||||| ||| | || ||||||||||| ||||||| |||| || ||||||||  |||||||||| ||||||||||||||||    
T  47806449 tatttatacctataattttaatcaaaatcaaaataattttaattaaaatttcataaaaatacttgtttgtaattttatacgcattaaca 47806361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 28513560 - 28513667
Alignment:
Q  26 tatattgttggggttattaaaaaagataaatatgatttggtacggtatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaatattttt 125  Q
    ||||||||||| || ||| ||||| |||| ||| ||||  ||   ||||||||| ||||||||||||||||||| ||| |||  ||||||||||| ||||    
T  28513560 tatattgttggtgtgattgaaaaaaataagtataatttattataatatgaaagtgtaaaatatttatacctataattttattaaaaatcaaaataatttt 28513659  T
Q  126 aatcaaaa 133  Q
    ||||||||    
T  28513660 aatcaaaa 28513667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 2765942 - 2765894
Alignment:
Q  123 tttaatcaaaactttataaaaattattgtttgtaatttatacgcattaa 171  Q
    |||||||||||||| ||||||||||||||| |||||||||||| |||||    
T  2765942 tttaatcaaaacttcataaaaattattgttcgtaatttatacgtattaa 2765894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 37442748 - 37442675
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    ||||||||||| | |||||||||| || | |||||||||||||   ||||||||||||||| |||||| |||||    
T  37442748 aaatcaaaatagtcttaatcaaaatttcagaaaaattattgttcaaaatttatacgcattagcacaatgaaaag 37442675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 4505949 - 4506006
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||||||||||| || ||| ||| || |||||||||||||||||||||| | ||||||    
T  4505949 ttttaatcaaaatttaatagaaactactgtttgtaatttatacgcattatcgcaataa 4506006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 24911209 - 24911281
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    |||| |||||| ||||||| |||| |||| |||||| |||||| |||| |||||| ||||| ||||||||||||    
T  24911209 aaataaaaataattttaattaaaattttaaaaaaat-attgttagtaagttatactcattagcacaataaaaag 24911281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 39678300 - 39678341
Alignment:
Q  129 caaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    ||||| |||||||||||| ||||| |||||||||||||||||    
T  39678300 caaaattttataaaaattgttgttcgtaatttatacgcatta 39678341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 42906355 - 42906298
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    ||||| |||||| || ||||||| |||||||||||||||||| |||||| | ||||||    
T  42906355 ttttagtcaaaatttcataaaaactattgtttgtaatttatatgcattagcgcaataa 42906298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 43028123 - 43028070
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttata 163  Q
    ||||||||||| |||||||||||| || ||||||| |||| || ||||||||||    
T  43028123 aaatcaaaataattttaatcaaaatttcataaaaactattattcgtaatttata 43028070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 12520548 - 12520520
Alignment:
Q  155 taatttatacgcattaacacaataaaaag 183  Q
    |||||||||||||||||||||||||||||    
T  12520548 taatttatacgcattaacacaataaaaag 12520520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 3513582 - 3513635
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttata 163  Q
    ||||||||||| |||||||||||| || || |||||||||||||||||||||||    
T  3513582 aaatcaaaataattttaatcaaaatttcattaaaattattgtttgtaatttata 3513635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 41372598 - 41372691
Alignment:
Q  26 tatattgttggggttattaaaaaagataaatatgatttggtacggtatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaat 119  Q
    |||| |||||| || |||||||||||||| ||| ||||| |||  ||||||||| ||||||| ||||||||||| ||| | || ||||||||||    
T  41372598 tataatgttggtgtcattaaaaaagataagtataatttgttacactatgaaagtgtaaaatagttatacctataattttaatcaaaatcaaaat 41372691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 7576669 - 7576776
Alignment:
Q  74 gaaagtttaaaatatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaaca 173  Q
    |||||| |||||||||||||| |||| ||| | || |||| |||||| |||||||||||| |   | |||||||||||| ||||||||||||| ||| |     
T  7576669 gaaagtgtaaaatatttatacatataatttgaatcaaaataaaaataattttaatcaaaa-tagtttaaaattattgttcgtaatttatacgcgttagcg 7576767  T
Q  174 caataaaaa 182  Q
    |||||||||    
T  7576768 caataaaaa 7576776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 11911931 - 11911884
Alignment:
Q  135 tttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  11911931 tttacaaaaactattgtttgtaatttatacgcattaacgcaataaaaa 11911884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 29767078 - 29767020
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcat 168  Q
    |||||||| || ||||||| |||| |||| |||||||||||||||||||||||| ||||    
T  29767078 aaatcaaattaattttaattaaaaatttagaaaaattattgtttgtaatttatatgcat 29767020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 8137526 - 8137453
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    ||||||||||| |||||||||||| || ||||||| |||| || ||||||||||  |||||  |||||||||||    
T  8137526 aaatcaaaataattttaatcaaaatttcataaaaactattattcgtaatttatagacattatgacaataaaaag 8137453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 1356677 - 1356709
Alignment:
Q  143 aattattgtttgtaatttatacgcattaacaca 175  Q
    |||||||||||||||||||||||||||||||||    
T  1356677 aattattgtttgtaatttatacgcattaacaca 1356709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 9270694 - 9270638
Alignment:
Q  126 aatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||||||| || |||||||||||| ||||| ||| ||| ||||||||||||||||||    
T  9270694 aatcaaaatttaataaaaattattatttgtgattcatatgcattaacacaataaaaa 9270638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 1351852 - 1351903
Alignment:
Q  122 ttttaatcaaaactttataaaa-attattgtttgtaatttatacgcattaac 172  Q
    |||||||||||| || |||||| |||||||||||||||||| ||||||||||    
T  1351852 ttttaatcaaaatttcataaaaaattattgtttgtaatttacacgcattaac 1351903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 32411156 - 32411093
Alignment:
Q  121 tttttaatcaaaactttataa-aaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    ||||| ||||||| ||||||| |||||| ||||||||||||||||| |||||||  ||||||||    
T  32411156 ttttttatcaaaattttataagaaattaatgtttgtaatttatacgtattaacattataaaaag 32411093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 3541392 - 3541434
Alignment:
Q  146 tattgtttgtaatttatacgcattaacacaataaaaagttgag 188  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||    
T  3541392 tattatttgtaatttatacgtattaacacaataaaaagatgag 3541434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 29773285 - 29773211
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatac 164  Q
    |||||||||| ||| | || |||||||| || ||||||| |||| || | ||||||||||||| |||||||||||    
T  29773285 tatacctataattttaatcaaaatcaaattaattttaataaaaaattgagaaaaattattgttcgtaatttatac 29773211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 34151261 - 34151307
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcat 168  Q
    |||||||||||| || ||| ||| |||||||||||||||||||||||    
T  34151261 ttttaatcaaaatttaatagaaactattgtttgtaatttatacgcat 34151307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 3914230 - 3914287
Alignment:
Q  125 taatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||||| || || ||||| |||||||||||||||||||| |||||| |||||| ||||    
T  3914230 taatcataatttcataaatattattgtttgtaatttatatgcattagcacaatcaaaa 3914287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 6235387 - 6235350
Alignment:
Q  126 aatcaaaactttataaaaattattgtttgtaatttata 163  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  6235387 aatcaaaattttataaaaattattgttcgtaatttata 6235350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 40722358 - 40722407
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaa 171  Q
    |||||||||||| ||||||||| ||||||||  |||||||||| ||||||    
T  40722358 ttttaatcaaaattttataaaagttattgttcataatttatacacattaa 40722407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 45521631 - 45521716
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacaca 175  Q
    |||||||||| ||| | || ||||||||||| |||||||||| | || ||||||| |||||||  |||||| ||| | ||||||||    
T  45521631 tatacctataattttaatcaaaatcaaaataattttaatcaatatttcataaaaactattgttcataatttttacacgttaacaca 45521716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 3541011 - 3541083
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 182  Q
    |||||||||||  ||||||||| | || |||||| ||| |||| ||||||||||| ||||| | |||||||||    
T  3541011 aaatcaaaatagatttaatcaacatttcataaaagttaatgttcgtaatttatacacattagcgcaataaaaa 3541083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 38457152 - 38457116
Alignment:
Q  135 tttataaaaattattgtttgtaatttatacgcattaa 171  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  38457152 tttataaaaattattgttcgtaatttgtacgcattaa 38457116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 45537692 - 45537612
Alignment:
Q  90 tatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||||||||| ||| | || |||||||| || |||| ||||||| || ||||||| |||  ||||||||||||| ||||||    
T  45537692 tatacctatatttttaatcaaaatcaaattaattttcatcaaaatttcataaaaactatcatttgtaatttatatgcatta 45537612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 25637148 - 25637079
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||||||| || |||||||||||| || |||||||||| |||| |||||| |||||| ||||||||||||    
T  25637148 aaatcaaattaattttaatcaaaatttcataaaaattaatgttcgtaattgatacgccttaacacaataa 25637079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 38502380 - 38502465
Alignment:
Q  85 atatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||| |||||||||| ||| | || ||||||||||| ||||||||| || ||||||||||  |||||| |||||||||| ||||||    
T  38502380 atatctatacctataattttaatcaaaatcaaaataattttaatcagaattttataaaaacaattgttcgtaatttatatgcatta 38502465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 7302353 - 7302465
Alignment:
Q  71 tatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcatta 170  Q
    |||||||||  ||||||||| || |||||  || | || |||||||| ||  |||||| |||| |||||| |||||| |||||||||||||| | |||||    
T  7302353 tatgaaagtgaaaaatatttgtatctataaatttaatcaaaatcaaattaactttaattaaaattttatataaattaatgtttgtaatttatgcacatta 7302452  T
Q  171 acacaataaaaag 183  Q
    | |||||||||||    
T  7302453 atacaataaaaag 7302465  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 2001351 - 2001413
Alignment:
Q  110 aaatcaaaatat-ttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaa 171  Q
    ||||||||| || |||||||||||| |||||||||| ||||||| |||||||||||| |||||    
T  2001351 aaatcaaaaaatgttttaatcaaaattttataaaaaatattgttcgtaatttatacgtattaa 2001413  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 40859960 - 40860022
Alignment:
Q  117 aatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||| |||||||||||| || || |||| ||||||| ||||||||||||||||| | ||||||    
T  40859960 aataattttaatcaaaatttcattaaaactattgttcgtaatttatacgcattagcgcaataa 40860022  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 8785360 - 8785413
Alignment:
Q  110 aaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttata 163  Q
    ||||||||||| |||||||||||| || ||||||| ||||||| |||| |||||    
T  8785360 aaatcaaaataattttaatcaaaatttcataaaaactattgttcgtaaattata 8785413  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 32217035 - 32216994
Alignment:
Q  138 ataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    ||||||| |||||||| |||||||||||||||||| ||||||    
T  32217035 ataaaaaatattgtttataatttatacgcattaacgcaataa 32216994  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 33228301 - 33228394
Alignment:
Q  51 ataaatatgatttggtacggtatgaaagtttaaaatatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaa 144  Q
    |||| ||| ||||| ||| |||| |||||  ||||||| |||||||||| ||| | || ||||||||||| ||| |||||||| || |||||||    
T  33228301 ataattataatttgttacagtataaaagtacaaaatatgtatacctataattttagtcaaaatcaaaataatttaaatcaaaatttcataaaaa 33228394  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 35155932 - 35155989
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||||||||||| || ||||||| || | ||  |||||||||||||||||||||||||    
T  35155932 ttttaatcaaaatttcataaaaaataatattcataatttatacgcattaacacaataa 35155989  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 41635961 - 41635853
Alignment:
Q  74 gaaagtttaaaatatttatacctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaaca 173  Q
    |||||| |||||||  |||||||||| ||| | || |||| ||| |  |||||||||||| |||| ||||| |||  |||||||||||||| || || |     
T  41635961 gaaagtgtaaaatagctatacctataattttaatcaaaattaaatttattttaatcaaaattttacaaaaactatcatttgtaatttatacacactagcg 41635862  T
Q  174 caataaaaa 182  Q
    |||||||||    
T  41635861 caataaaaa 41635853  T

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Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 167620 - 167553
Alignment:
Q  93 acctatagtttcattccaaatcaaaatatttttaatcaaaactttataaaaattattgtttgtaattt 160  Q
    ||||||| ||| | || |||| ||||||||||||||||||| || ||||||| |||||||||||||||    
T  167620 acctatattttaaatcaaaataaaaatatttttaatcaaaatttcataaaaactattgtttgtaattt 167553  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 12808565 - 12808624
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaa 181  Q
    |||||||||||| || |||||| |||| |||||| ||||||||||||||||  |||||||    
T  12808565 ttttaatcaaaatttcataaaagttatcgtttgtgatttatacgcattaacgaaataaaa 12808624  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 9155375 - 9155319
Alignment:
Q  122 ttttaatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataa 179  Q
    |||||||||||| |||||||| | || |||| ||||||||||||||||||| ||||||    
T  9155375 ttttaatcaaaa-tttataaagactactgttcgtaatttatacgcattaacgcaataa 9155319  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 32570297 - 32570241
Alignment:
Q  126 aatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaag 183  Q
    |||||||| || ||||||| ||| ||| |||||||||||||||||||| |||||||||    
T  32570297 aatcaaaatttcataaaaactat-gttcgtaatttatacgcattaacataataaaaag 32570241  T

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Target: scaffold0157 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 369 - 397
Alignment:
Q  155 taatttatacgcattaacacaataaaaag 183  Q
    |||||||||||||||||||||||||||||    
T  369 taatttatacgcattaacacaataaaaag 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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