View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_2 (Length: 583)
Name: NF20408_low_2
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 4 - 567
Target Start/End: Complemental strand, 26422464 - 26421904
Alignment:
| Q |
4 |
gatggacatcatcaaaattcccgcaaaacctgaagtaaagctcctcactcagaaaaaatttgtgcccatcatcaaaattccagcaactgactcctcccac |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26422464 |
gatggccatcatcaaaattcccgcaaaacctgaagtaaagctcctcactcagaagaaatttgtgcccatcatcaaaattcccgcaactgactcctcccac |
26422365 |
T |
|
| Q |
104 |
ttgacaccactattctcatatcgcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422364 |
ttgacaccactattctcatatcgcccttttcaattttattcctccccaatattcacttttgtactccagattttagttccacttgcagtttcctttgagt |
26422265 |
T |
|
| Q |
204 |
tcttttttatccctaaaatattaatctttccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagc |
303 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26422264 |
tcttttttatccctaaaatattaatctgtccctgaatgtgcatcaccacatgcctgaacttcagctattttctccggctggagtcttaaagtttggaagc |
26422165 |
T |
|
| Q |
304 |
atcttctcatatagtctcttctatgaattgtctttcttaatgaataactaacttaggtgttttctccccctgttccacgatatttccagtaatcaattct |
403 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26422164 |
atcttctcatatagtctcttctatgaattgtctttctcaatgaataactaactta---gttttctccccctgttccacaatatttccagtaatcaattct |
26422068 |
T |
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| Q |
404 |
tttaatgtcattccacacctgtgctctccacatccatcccctgagcgccacctgcctgaatttcagtcatgttcttgaggctggagtctaaaatttttaa |
503 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26422067 |
tttaatgttattccacacctgtgctctccacatccatcccctgagcgccacctgcctgaatttcagtcatgttcttgaggctggagtctaaaatttttca |
26421968 |
T |
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| Q |
504 |
aagcgtcttctcatatagtgtcctatagattgtctttccaaatgattaagtaatttgttgttct |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26421967 |
aagcgtcttctcatatagtgtcctatagattgtctttccaaatgattaagtaatttgttgttct |
26421904 |
T |
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