View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20408_low_25 (Length: 380)
Name: NF20408_low_25
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 15474746 - 15474909
Alignment:
| Q |
11 |
caaaggcaattcatctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtgaaaaaagcagcaccataa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15474746 |
caaaggcaattcatctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtgaaaaaagcagcaccataa |
15474845 |
T |
|
| Q |
111 |
atccgatgttgtttagccacatcaagtgcccaaggtagaaaagaatcatacacaatgcaagtga |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15474846 |
atccgatgttgtttagccacatcaagtgcccaaggtagaaaagaatcatacacaatgcaagtga |
15474909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 15467195 - 15467358
Alignment:
| Q |
11 |
caaaggcaattcatctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtgaaaaaagcagcaccataa |
110 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15467195 |
caaaggcaattcatcaacaggaatttcaatcaaaccatgatgtatacgacaaaaaatgttacaaacagcagctgaattagtgaaaaaagcagcaccataa |
15467294 |
T |
|
| Q |
111 |
atccgatgttgtttagccacatcaagtgcccaaggtagaaaagaatcatacacaatgcaagtga |
174 |
Q |
| |
|
|| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
15467295 |
ataccatgttgtttagcaacatcaagtgcccaaggtagaaaagaatcatagacaatgcatgtga |
15467358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 15474988 - 15475099
Alignment:
| Q |
253 |
agagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattggttcgacggagatgtttggtgcagtgatggatttaacagtgta |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15474988 |
agagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattggttcgacggagatgtttggtgcagtgatggatttaacagtgta |
15475087 |
T |
|
| Q |
353 |
atgggttgttgc |
364 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15475088 |
atgggttgttgc |
15475099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 15467437 - 15467548
Alignment:
| Q |
253 |
agagttcaacatttttggcttgtgaaaaaccggattcgtcgaacccatcagagattggttcgacggagatgtttggtgcagtgatggatttaacagtgta |
352 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||| ||||||||| |
|
|
| T |
15467437 |
agagttcaacattgttggcttgtgtaaaaccggattcgtcgaacccatcagagattggttcgacggatacgtttggtgcggttatggattgaacagtgta |
15467536 |
T |
|
| Q |
353 |
atgggttgttgc |
364 |
Q |
| |
|
||| |||||||| |
|
|
| T |
15467537 |
atgtgttgttgc |
15467548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University