View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_27 (Length: 355)
Name: NF20408_low_27
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 340
Target Start/End: Complemental strand, 38399675 - 38399340
Alignment:
| Q |
5 |
tagataatactgtggctgctgggcatagtgctgactaaatagcttgagatagggactactcttgtcttaacataaataaattagttaggtttgacaaatg |
104 |
Q |
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| T |
38399675 |
tagataatgttgtggctgctgggcatagtgctgactaa-tagcttgagatagggactactcttgtcttaacataaataaattagttaggtttgacaaatg |
38399577 |
T |
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| Q |
105 |
gaccctagtttgaaatttcattaaagttagctagatgataaaaaacgagatttggctaagcattctgaaatacaacaacataaaaaa-ttctttgttttg |
203 |
Q |
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| T |
38399576 |
gaccctagtttgaaatttcattaaagctagctagatgataaaaaacgagatttggctaagcattctgaaatacaacaacataaaaaaattctttgttttg |
38399477 |
T |
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| Q |
204 |
actttatatattttaacaagctaaaatattgaattgaattaatgatgagacaggaactactacaaatgttcaagtgtgggatgtaatgtgaagaaaaggg |
303 |
Q |
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| T |
38399476 |
actttatatattttaacaagctaaaatattgaattgaattaatgatgagacaggaactactacaaatgttcaagtgtgggatgtaatgtgaagaaaaggg |
38399377 |
T |
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| Q |
304 |
tggaaagggatagagatgattcgagctatgtgataac |
340 |
Q |
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| T |
38399376 |
tggaaagggatagagatgattcgagctatgtgataac |
38399340 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 340
Target Start/End: Complemental strand, 43386131 - 43386045
Alignment:
| Q |
254 |
caggaactactacaaatgttcaagtgtgggatgtaatgtgaagaaaagggtggaaagggatagagatgattcgagctatgtgataac |
340 |
Q |
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| T |
43386131 |
caggaactactacaagtgttcaggtgaaagatgtggtgttaagaaaagggtggaaagggatagggaagattcaagctatgtgttaac |
43386045 |
T |
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