View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20408_low_35 (Length: 325)

Name: NF20408_low_35
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20408_low_35
NF20408_low_35
[»] chr5 (11 HSPs)
chr5 (66-319)||(22750998-22751251)
chr5 (86-269)||(38144532-38144714)
chr5 (86-261)||(28370058-28370232)
chr5 (86-261)||(19512263-19512438)
chr5 (151-274)||(23528573-23528695)
chr5 (200-261)||(18407947-18408008)
chr5 (200-315)||(23111147-23111264)
chr5 (209-261)||(22438751-22438803)
chr5 (210-261)||(19236900-19236951)
chr5 (212-261)||(22461158-22461207)
chr5 (212-261)||(22467782-22467831)
[»] chr7 (24 HSPs)
chr7 (66-319)||(18873217-18873470)
chr7 (66-261)||(15168032-15168227)
chr7 (66-260)||(10895795-10895989)
chr7 (66-268)||(14422841-14423043)
chr7 (69-269)||(12709839-12710038)
chr7 (69-269)||(13122910-13123109)
chr7 (66-269)||(13743566-13743768)
chr7 (86-261)||(16009454-16009628)
chr7 (73-269)||(12590639-12590832)
chr7 (151-269)||(13007374-13007491)
chr7 (96-261)||(16677180-16677347)
chr7 (96-261)||(17651416-17651583)
chr7 (209-261)||(11382874-11382926)
chr7 (209-261)||(11389351-11389403)
chr7 (209-261)||(20311055-20311107)
chr7 (209-261)||(21230963-21231015)
chr7 (201-261)||(13679485-13679545)
chr7 (210-261)||(2971254-2971305)
chr7 (210-261)||(11311059-11311110)
chr7 (210-261)||(20906465-20906516)
chr7 (208-259)||(46625961-46626012)
chr7 (229-269)||(831629-831669)
chr7 (229-269)||(1196809-1196849)
chr7 (229-269)||(34958578-34958618)
[»] scaffold0029 (1 HSPs)
scaffold0029 (66-269)||(111738-111942)
[»] scaffold0026 (2 HSPs)
scaffold0026 (66-269)||(11846-12049)
scaffold0026 (86-261)||(111563-111737)
[»] chr3 (22 HSPs)
chr3 (66-261)||(14762761-14762956)
chr3 (66-261)||(20247792-20247987)
chr3 (66-261)||(38310803-38310998)
chr3 (71-261)||(24192817-24193008)
chr3 (86-261)||(9534205-9534379)
chr3 (86-261)||(23370509-23370684)
chr3 (151-261)||(24933832-24933941)
chr3 (183-269)||(41455093-41455178)
chr3 (125-269)||(16801463-16801606)
chr3 (86-261)||(55499105-55499281)
chr3 (203-261)||(18929239-18929297)
chr3 (200-261)||(17240516-17240577)
chr3 (210-261)||(13302244-13302295)
chr3 (210-261)||(13323791-13323842)
chr3 (210-261)||(12033448-12033499)
chr3 (210-261)||(13312900-13312951)
chr3 (210-261)||(17131732-17131783)
chr3 (210-261)||(51301589-51301640)
chr3 (151-261)||(10389447-10389557)
chr3 (151-261)||(10414536-10414646)
chr3 (151-261)||(10421206-10421316)
chr3 (208-261)||(16801027-16801080)
[»] chr6 (24 HSPs)
chr6 (66-261)||(23057795-23057990)
chr6 (66-269)||(29614142-29614345)
chr6 (68-269)||(18800296-18800497)
chr6 (86-315)||(23839075-23839306)
chr6 (66-261)||(4477714-4477909)
chr6 (86-261)||(10986184-10986359)
chr6 (132-269)||(930091-930227)
chr6 (151-269)||(12168305-12168422)
chr6 (151-269)||(19287214-19287331)
chr6 (151-269)||(19785865-19785982)
chr6 (151-269)||(19878398-19878515)
chr6 (151-269)||(19884174-19884291)
chr6 (182-261)||(34639990-34640069)
chr6 (66-261)||(21565215-21565410)
chr6 (182-261)||(34646664-34646743)
chr6 (151-261)||(25469708-25469816)
chr6 (209-257)||(24512851-24512899)
chr6 (212-261)||(9187498-9187547)
chr6 (208-261)||(25348486-25348539)
chr6 (208-261)||(25598643-25598696)
chr6 (208-261)||(25397172-25397225)
chr6 (208-261)||(2286770-2286823)
chr6 (208-261)||(19471338-19471391)
chr6 (200-261)||(31252413-31252474)
[»] scaffold1773 (1 HSPs)
scaffold1773 (66-269)||(1036-1237)
[»] scaffold0006 (1 HSPs)
scaffold0006 (66-269)||(50037-50238)
[»] chr4 (12 HSPs)
chr4 (66-269)||(8045828-8046030)
chr4 (66-269)||(11847964-11848173)
chr4 (151-261)||(53483646-53483756)
chr4 (209-261)||(15408139-15408191)
chr4 (208-261)||(8834895-8834948)
chr4 (208-261)||(13888641-13888694)
chr4 (210-261)||(14486661-14486712)
chr4 (208-259)||(22724691-22724742)
chr4 (208-261)||(15245215-15245268)
chr4 (208-259)||(15308120-15308171)
chr4 (210-259)||(27906266-27906315)
chr4 (229-269)||(15747552-15747592)
[»] scaffold0025 (1 HSPs)
scaffold0025 (66-261)||(14399-14595)
[»] scaffold0924 (1 HSPs)
scaffold0924 (66-269)||(746-949)
[»] scaffold0247 (1 HSPs)
scaffold0247 (87-269)||(11219-11401)
[»] chr8 (14 HSPs)
chr8 (86-261)||(44477500-44477674)
chr8 (86-261)||(44492658-44492832)
chr8 (85-269)||(23866490-23866674)
chr8 (86-261)||(8727736-8727911)
chr8 (151-261)||(17054533-17054642)
chr8 (208-317)||(18614271-18614380)
chr8 (200-261)||(23482056-23482117)
chr8 (86-173)||(27940946-27941032)
chr8 (208-261)||(39364919-39364972)
chr8 (210-261)||(29643389-29643440)
chr8 (209-261)||(14056567-14056619)
chr8 (209-261)||(25111976-25112028)
chr8 (210-261)||(24320674-24320725)
chr8 (208-261)||(21931696-21931749)
[»] chr2 (15 HSPs)
chr2 (86-261)||(6483595-6483769)
chr2 (86-261)||(6487062-6487236)
chr2 (66-261)||(19661457-19661651)
chr2 (96-269)||(26583715-26583886)
chr2 (86-261)||(23878885-23879059)
chr2 (66-261)||(23089058-23089253)
chr2 (86-261)||(23101466-23101641)
chr2 (151-261)||(5706027-5706137)
chr2 (200-261)||(23265133-23265194)
chr2 (200-261)||(23280201-23280262)
chr2 (203-261)||(21908353-21908411)
chr2 (208-261)||(24661576-24661629)
chr2 (210-261)||(10577-10628)
chr2 (210-261)||(25180933-25180984)
chr2 (161-261)||(26885133-26885233)
[»] scaffold0117 (2 HSPs)
scaffold0117 (66-269)||(1893-2095)
scaffold0117 (66-269)||(8570-8772)
[»] chr1 (12 HSPs)
chr1 (86-315)||(20436971-20437202)
chr1 (151-269)||(41111977-41112094)
chr1 (200-317)||(32651563-32651680)
chr1 (200-261)||(18712790-18712851)
chr1 (209-261)||(19663520-19663572)
chr1 (208-261)||(10811786-10811839)
chr1 (208-261)||(20805320-20805373)
chr1 (209-261)||(11158093-11158145)
chr1 (210-261)||(20851136-20851187)
chr1 (210-261)||(20857763-20857814)
chr1 (210-261)||(21706276-21706327)
chr1 (210-261)||(21710818-21710869)
[»] scaffold0058 (1 HSPs)
scaffold0058 (66-269)||(149-350)
[»] scaffold0456 (4 HSPs)
scaffold0456 (182-319)||(904-1041)
scaffold0456 (182-319)||(8049-8186)
scaffold0456 (66-119)||(846-899)
scaffold0456 (66-119)||(7991-8044)
[»] scaffold0553 (1 HSPs)
scaffold0553 (86-261)||(10199-10374)
[»] scaffold0544 (1 HSPs)
scaffold0544 (86-261)||(1529-1704)
[»] scaffold0090 (1 HSPs)
scaffold0090 (67-269)||(18026-18229)
[»] scaffold0154 (1 HSPs)
scaffold0154 (125-269)||(30772-30917)
[»] scaffold0796 (2 HSPs)
scaffold0796 (151-269)||(1728-1845)
scaffold0796 (151-269)||(5751-5868)
[»] scaffold0476 (1 HSPs)
scaffold0476 (68-261)||(3296-3490)
[»] scaffold0077 (1 HSPs)
scaffold0077 (86-261)||(3625-3800)
[»] scaffold0004 (1 HSPs)
scaffold0004 (200-317)||(116887-117004)
[»] scaffold0129 (1 HSPs)
scaffold0129 (153-261)||(45278-45386)
[»] scaffold0222 (1 HSPs)
scaffold0222 (200-261)||(16811-16872)
[»] scaffold0461 (1 HSPs)
scaffold0461 (200-261)||(11-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (200-261)||(13623-13684)
[»] scaffold0020 (1 HSPs)
scaffold0020 (200-261)||(101931-101992)
[»] scaffold0310 (1 HSPs)
scaffold0310 (209-261)||(17643-17695)
[»] scaffold0107 (1 HSPs)
scaffold0107 (209-261)||(40535-40587)
[»] scaffold0019 (1 HSPs)
scaffold0019 (209-261)||(135473-135525)
[»] scaffold0235 (1 HSPs)
scaffold0235 (211-261)||(22596-22646)
[»] scaffold0139 (1 HSPs)
scaffold0139 (209-319)||(14942-15052)
[»] scaffold0124 (1 HSPs)
scaffold0124 (209-261)||(34279-34331)
[»] scaffold0138 (1 HSPs)
scaffold0138 (208-261)||(12296-12349)
[»] scaffold0317 (1 HSPs)
scaffold0317 (201-261)||(1378-1438)
[»] scaffold0634 (1 HSPs)
scaffold0634 (66-105)||(3519-3558)
[»] scaffold0096 (1 HSPs)
scaffold0096 (208-261)||(39510-39563)
[»] scaffold0815 (1 HSPs)
scaffold0815 (213-261)||(1453-1501)
[»] scaffold1318 (1 HSPs)
scaffold1318 (210-261)||(1916-1967)
[»] scaffold0348 (1 HSPs)
scaffold0348 (210-261)||(9336-9387)
[»] scaffold0127 (1 HSPs)
scaffold0127 (210-261)||(10239-10290)
[»] scaffold0023 (1 HSPs)
scaffold0023 (210-261)||(135438-135489)
[»] scaffold0001 (1 HSPs)
scaffold0001 (210-261)||(493032-493082)
[»] scaffold2054 (1 HSPs)
scaffold2054 (176-269)||(680-774)
[»] scaffold0609 (1 HSPs)
scaffold0609 (200-261)||(5861-5922)
[»] scaffold0335 (1 HSPs)
scaffold0335 (208-261)||(2631-2684)
[»] scaffold0028 (1 HSPs)
scaffold0028 (212-319)||(69749-69857)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 66 - 319
Target Start/End: Original strand, 22750998 - 22751251
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  22750998 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 22751097  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatag 265  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||    
T  22751098 aaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttag 22751197  T
Q  266 ttttagaagaaacgcacaacgaccagattctctgactatacttgttcttctctc 319  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22751198 ttttagaagaaacgcacaacgaccggattctctgactatacttgttcttctctc 22751251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 86 - 269
Target Start/End: Complemental strand, 38144714 - 38144532
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  38144714 agattaagttttcattctaaacattacattacaatagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttat 38144616  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 269  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38144615 tttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 38144532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 28370232 - 28370058
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||    
T  28370232 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttat 28370134  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28370133 tttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 28370058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 19512263 - 19512438
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||    
T  19512263 agattaagttttcattctaaacattacgttacaatagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttat 19512361  T
Q  186 tttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
     |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19512362 cttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 19512438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 151 - 274
Target Start/End: Original strand, 23528573 - 23528695
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23528573 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 23528671  T
Q  251 tcacccttaccatagttttagaag 274  Q
    ||||||||||| ||||||||||||    
T  23528672 tcacccttaccttagttttagaag 23528695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 18408008 - 18407947
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacc 18407947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 23111264 - 23111147
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttt--tagaagaaacgcacaacgaccagattctc 297  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| || |||    ||| ||| ||||||| | | |||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttaccttaatttagatgaacaaaagcacaacaatcggattctc 23111165  T
Q  298 tgactatacttgttcttc 315  Q
    |||||  |||||||||||    
T  23111164 tgactccacttgttcttc 23111147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 22438803 - 22438751
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttacc 22438751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 19236900 - 19236951
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 19236951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 22461158 - 22461207
Alignment:
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttacc 22461207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 22467782 - 22467831
Alignment:
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttacc 22467831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 66 - 319
Target Start/End: Original strand, 18873217 - 18873470
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  18873217 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 18873316  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatag 265  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||    
T  18873317 aaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttag 18873416  T
Q  266 ttttagaagaaacgcacaacgaccagattctctgactatacttgttcttctctc 319  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  18873417 ttttagaagaaacgcacaacggccggattctctgactatacttgttcttctctc 18873470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 66 - 261
Target Start/End: Original strand, 15168032 - 15168227
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  15168032 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 15168131  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15168132 aaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacc 15168227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 66 - 260
Target Start/End: Complemental strand, 10895989 - 10895795
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| |||||| ||||||||||||| |    
T  10895989 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcaataccc-attcccctcagaatcatcatca 10895891  T
Q  166 aaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||| |||||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10895890 aaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 66 - 268
Target Start/End: Original strand, 14422841 - 14423043
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    |||||||||| || ||| | |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |    
T  14422841 tatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatca 14422939  T
Q  166 aaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccata 264  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14422940 aaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 14423039  T
Q  265 gttt 268  Q
    ||||    
T  14423040 gttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 269
Target Start/End: Complemental strand, 12710038 - 12709839
Alignment:
Q  69 gatcacagcagcaacaaagattaagttttcattctgaacattatattacaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaa 167  Q
    |||||||||| |||||| ||||||||||  |||||||||||||||||||||   ||||||||| |||||||||||| ||| ||||| ||||||||| |||    
T  12710038 gatcacagcaacaacaa-gattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaa 12709940  T
Q  168 ccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtt 267  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  12709939 ccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagtt 12709841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 269
Target Start/End: Complemental strand, 13123109 - 13122910
Alignment:
Q  69 gatcacagcagcaacaaagattaagttttcattctgaacattatattacaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaa 167  Q
    |||||||||| |||||| ||||||||||  |||||||||||||||||||||   ||||||||| |||||||||||| ||| ||||| ||||||||| |||    
T  13123109 gatcacagcaacaacaa-gattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaa 13123011  T
Q  168 ccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtt 267  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  13123010 ccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagtt 13122912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 269
Target Start/End: Original strand, 13743566 - 13743768
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    |||||||||||||  |||| ||||||||| |||| ||||||||  ||| ||||||  |||||||| |||||||||||| ||| ||||| ||||||||| |    
T  13743566 tatgatcacagcaataacatagattaagtcttcaatctgaacagcataatacaagaaaattaacatgatcattacccatttctcttcataatcatcatca 13743665  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatag 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||    
T  13743666 aaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttag 13743764  T
Q  266 tttt 269  Q
    ||||    
T  13743765 tttt 13743768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 16009454 - 16009628
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||| ||||||||    
T  16009454 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccttaacccacaatttat 16009552  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
     ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16009553 cttccaaaaccatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 16009628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 73 - 269
Target Start/End: Complemental strand, 12590832 - 12590639
Alignment:
Q  73 acagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaacccta 172  Q
    |||||| |||||  ||||||| ||||||||| ||||||| ||| ||||  || |||||  ||| |||| || |  || ||||||||||||| ||||||||    
T  12590832 acagcaacaacatggattaagctttcattcttaacattaaattccaagaaaactaacatcatctttactcatt--ccatcagaatcatcatcaaacccta 12590735  T
Q  173 accctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 269  Q
    ||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12590734 actttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 12590639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 13007374 - 13007491
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 13007472  T
Q  251 tcacccttaccatagtttt 269  Q
    ||||||||||| |||||||    
T  13007473 tcacccttaccttagtttt 13007491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 96 - 261
Target Start/End: Original strand, 16677180 - 16677347
Alignment:
Q  96 ttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaa 194  Q
    |||||||||||||| |  ||||||   | |||||| ||||||||| | || | | ||| ||||||||| ||||||||||||| ||||| || ||||||||    
T  16677180 ttcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaa 16677279  T
Q  195 -ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
     ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16677280 actatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacc 16677347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 96 - 261
Target Start/End: Original strand, 17651416 - 17651583
Alignment:
Q  96 ttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaa 194  Q
    |||||||||||||| |  ||||||   | |||||| ||||||||| | || | | ||| ||||||||| ||||||||||||| ||||| || ||||||||    
T  17651416 ttcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaa 17651515  T
Q  195 -ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
     ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17651516 actatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacc 17651583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 11382926 - 11382874
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacc 11382874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 11389403 - 11389351
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacc 11389351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 20311107 - 20311055
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttacc 20311055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 21231015 - 21230963
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 21230963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 13679485 - 13679545
Alignment:
Q  201 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||| |||||||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacc 13679545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 2971254 - 2971305
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttacc 2971305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 11311059 - 11311110
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||| ||||||| || | ||| ||||||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacc 11311110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 20906516 - 20906465
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 20906465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 46625961 - 46626012
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
    ||||||||| ||||||||| ||||| || |||||||| ||||||||||||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcaccctta 46626012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 831669 - 831629
Alignment:
Q  229 ttatgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagtttt 831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 1196849 - 1196809
Alignment:
Q  229 ttatgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagtttt 1196809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 34958578 - 34958618
Alignment:
Q  229 ttatgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagtttt 34958618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 66 - 269
Target Start/End: Original strand, 111738 - 111942
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  111738 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 111837  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaa-ttttcagaaattatagattatgattattgagagatagtctcacccttaccata 264  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  111838 aaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcacccttacctta 111937  T
Q  265 gtttt 269  Q
    |||||    
T  111938 gtttt 111942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 12049 - 11846
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  12049 tatgatcacagcaacaacaaagattaagttttcattctgaagattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 11950  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatag 265  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11949 aaccctaactctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 11850  T
Q  266 tttt 269  Q
    ||||    
T  11849 tttt 11846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 111563 - 111737
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  111563 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttat 111661  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111662 tttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 111737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 14762956 - 14762761
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  14762956 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 14762857  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14762856 aaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacc 14762761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 20247987 - 20247792
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||| ||||||||||||||||||| |    
T  20247987 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagaaaattaacatgatcattacccatttcccttcagaatcatcatca 20247888  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20247887 aaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 20247792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 38310998 - 38310803
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  38310998 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 38310899  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38310898 aaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacc 38310803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 71 - 261
Target Start/End: Original strand, 24192817 - 24193008
Alignment:
Q  71 tcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccc 170  Q
    |||||||| || || |||||||||||||||||||||||| | |||||||  ||||||||| |||||||||||| ||||||||||||||||||| ||||||    
T  24192817 tcacagcaacagcatagattaagttttcattctgaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccc 24192916  T
Q  171 taaccctcaatttattttcc-aaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24192917 taaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 24193008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 9534205 - 9534379
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||  ||||||||||||| |||||||||||||||||||||    
T  9534205 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttccactcagaatcatcatcaaaccctaaccctcaatttat 9534303  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9534304 tttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 9534379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 23370684 - 23370509
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| ||||||||    
T  23370684 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttat 23370586  T
Q  186 tttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
     |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23370585 cttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttacc 23370509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 24933941 - 24933832
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| |||||||||   |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24933941 tcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 24933843  T
Q  251 tcacccttacc 261  Q
    |||||||||||    
T  24933842 tcacccttacc 24933832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 41455178 - 41455093
Alignment:
Q  183 tattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41455178 tattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 41455093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 125 - 269
Target Start/End: Complemental strand, 16801606 - 16801463
Alignment:
Q  125 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaactaagcaattaggtcaattttcagaaatt 223  Q
    |||||| ||||||||| | |||| | ||| ||||||||| || |||||||| ||||||| || ||| ||| ||||||||| |||||||||||||||||||    
T  16801606 ttaacatgatcattacaccattctcctcaaaatcatcatcaa-ccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaattttcagaaatt 16801508  T
Q  224 atagattatgattattgagagatagtctcacccttaccatagtttt 269  Q
    ||| || ||||||||||||||||||||||||||||||| |||||||    
T  16801507 atatat-atgattattgagagatagtctcacccttaccttagtttt 16801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 55499281 - 55499105
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||| |||||||| |||||| | |||||||   |||||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||||||      
T  55499281 agattaagatttcattccgaacatcacattacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttta 55499183  T
Q  186 tttccaaaactaagcaattaggtcaatttt-cagaaattatagattat-gattattgagagatagtctcacccttacc 261  Q
    |   |||   |||||| ||||||||||||| | ||||||| | |||||  |||| |||||||||||||||||||||||    
T  55499182 tcctcaaggttaagcagttaggtcaattttcccgaaattacatattatctattaatgagagatagtctcacccttacc 55499105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 18929239 - 18929297
Alignment:
Q  203 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacc 18929297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 17240577 - 17240516
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacc 17240516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 13302295 - 13302244
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttacc 13302244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 13323842 - 13323791
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttacc 13323791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 12033499 - 12033448
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 12033448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 13312951 - 13312900
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||| |||||| | |||||||||||||| ||||| |||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttacc 13312900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 17131732 - 17131783
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 17131783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 51301589 - 51301640
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttacc 51301640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 10389557 - 10389447
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| |||||||||   |||  ||||| |  |||||||  ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10389557 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10389458  T
Q  251 tcacccttacc 261  Q
     ||||||||||    
T  10389457 ccacccttacc 10389447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 10414646 - 10414536
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| |||||||||   |||  ||||| |  |||||||  ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10414646 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10414547  T
Q  251 tcacccttacc 261  Q
     ||||||||||    
T  10414546 ccacccttacc 10414536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 10421316 - 10421206
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| |||||||||   |||  ||||| |  |||||||  ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10421316 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10421217  T
Q  251 tcacccttacc 261  Q
     ||||||||||    
T  10421216 ccacccttacc 10421206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 16801027 - 16801080
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||| ||||| ||||  || |||||||| ||||||||||||||||    
T  16801027 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacc 16801080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 66 - 261
Target Start/End: Original strand, 23057795 - 23057990
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| |    
T  23057795 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatca 23057894  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  23057895 aaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcacccttacc 23057990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 29614345 - 29614142
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||  || ||||| ||||||||| |||||||||||| ||||||||| ||||||||| |    
T  29614345 tatgatcacagcaacaacaaagattaagttttcattctaaacattcaat-acaagagaattaacatgatcattacccatttcccttcataatcatcatca 29614247  T
Q  166 aaccctaaccctcaatttatttt-ccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccata 264  Q
    ||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29614246 aaccctaaccctcaatttatttttccaaaattatgcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 29614147  T
Q  265 gtttt 269  Q
    |||||    
T  29614146 gtttt 29614142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 68 - 269
Target Start/End: Original strand, 18800296 - 18800497
Alignment:
Q  68 tgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaa 167  Q
    |||||||| || ||| | |||||||| ||||||| ||||||| | |||||||  ||||||||| ||||||||| || |||||| |||||||||||| |||    
T  18800296 tgatcacaacaacaatatagattaagatttcattttgaacatcacattacaacagaattaacatgatcattactca-ttccctccagaatcatcatcaaa 18800394  T
Q  168 ccctaaccctcaatt-tattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagt 266  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  18800395 ccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagt 18800494  T
Q  267 ttt 269  Q
    |||    
T  18800495 ttt 18800497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 86 - 315
Target Start/End: Original strand, 23839075 - 23839306
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||||||||||| |||||||  ||||||||| ||||| |||||| | ||||| ||||||||||| |||||||||||||||||||||    
T  23839075 agattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccattcccctt-agaatcatcatcaaaccctaaccctcaatttat 23839173  T
Q  186 tttccaaa-actaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttt--tagaagaaacgcac 282  Q
     ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    ||| ||| ||||    
T  23839174 cttccaaacactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatttagatgaacaaaagcac 23839273  T
Q  283 aacgaccagattctctgactatacttgttcttc 315  Q
    ||| | | ||||||||||||  |||||||||||    
T  23839274 aacaatcggattctctgactccacttgttcttc 23839306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 66 - 261
Target Start/End: Original strand, 4477714 - 4477909
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    |||||||||| || ||| | |||||||||||||||||| ||||||| |||||||  |||||| || ||||| |||||| ||||| ||||||||||||| |    
T  4477714 tatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattagcatgatcaataccca-ttcccctcagaatcatcatca 4477812  T
Q  166 aaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4477813 aaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 4477909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 10986359 - 10986184
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||||||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  10986359 agattaagttttcattctgaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttat 10986261  T
Q  186 tttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
     |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  10986260 cttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttacc 10986184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 132 - 269
Target Start/End: Complemental strand, 930227 - 930091
Alignment:
Q  132 gatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagatta 231  Q
    |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| |||||||||    
T  930227 gatcattaccca-ttcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagatta 930129  T
Q  232 tgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||||||||||||||||||||||||||||| |||||||    
T  930128 tgattattgagagatagtctcacccttaccttagtttt 930091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 12168305 - 12168422
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 12168403  T
Q  251 tcacccttaccatagtttt 269  Q
    ||||||||||| |||||||    
T  12168404 tcacccttaccttagtttt 12168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 19287214 - 19287331
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19287312  T
Q  251 tcacccttaccatagtttt 269  Q
    ||||||||||| |||||||    
T  19287313 tcacccttaccttagtttt 19287331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 19785982 - 19785865
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  ||| |||||||||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtc 19785884  T
Q  251 tcacccttaccatagtttt 269  Q
    ||||||||||| |||||||    
T  19785883 tcacccttaccttagtttt 19785865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 19878398 - 19878515
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19878496  T
Q  251 tcacccttaccatagtttt 269  Q
    ||||||||||| |||||||    
T  19878497 tcacccttaccttagtttt 19878515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 19884174 - 19884291
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 19884272  T
Q  251 tcacccttaccatagtttt 269  Q
    ||||||| ||| |||||||    
T  19884273 tcaccctaaccttagtttt 19884291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 34640069 - 34639990
Alignment:
Q  182 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34640069 ttattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttacc 34639990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 21565410 - 21565215
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| ||  | |||||||| |||||||| |||| | | |||||||   |||||||| |||||||||||| | ||||| ||||||||||| |    
T  21565410 tatgatcacagcaacagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattcccctt-agaatcatcatca 21565312  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||  |   |||   ||||||||||||||||||||| ||||||| | |||||  |||| |||||||||||||||||||||||    
T  21565311 aaccctaaccctcaattttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacc 21565215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 34646743 - 34646664
Alignment:
Q  182 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34646743 ttattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttacc 34646664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 25469816 - 25469708
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||| ||||| |||||||||   |||  |||||||||||||| |  ||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  25469816 tcagaattatcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtc 25469719  T
Q  251 tcacccttacc 261  Q
    |||||||||||    
T  25469718 tcacccttacc 25469708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 24512899 - 24512851
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcaccct 257  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccct 24512851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 9187498 - 9187547
Alignment:
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacc 9187547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 25348486 - 25348539
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacc 25348539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 25598643 - 25598696
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||| |||| |||||||| |||||||| ||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacc 25598696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 25397172 - 25397225
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||| |||||||| || ||||| ||| ||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacc 25397225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 2286823 - 2286770
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||| ||||| ||||  || |||||||| ||||||||||||||||    
T  2286823 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacc 2286770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 19471391 - 19471338
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||| |||||||| || ||||| ||| ||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacc 19471338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 31252413 - 31252474
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| | ||||||||||||||||| ||||| || ||| | ||||| |||||||||||||    
T  31252413 caattagattaattttcagaaattatatattataatcattaaaagataatctcacccttacc 31252474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 66 - 269
Target Start/End: Original strand, 1036 - 1237
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |||| |||| |    
T  1036 tatgatcacagcaacaacaa-gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatca 1134  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatag 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  1135 aaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttag 1233  T
Q  266 tttt 269  Q
    ||||    
T  1234 tttt 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 66 - 269
Target Start/End: Original strand, 50037 - 50238
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |||| |||| |    
T  50037 tatgatcacagcaacaacaa-gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatca 50135  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatag 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  50136 aaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttag 50234  T
Q  266 tttt 269  Q
    ||||    
T  50235 tttt 50238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 8046030 - 8045828
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||  ||| ||||||| |||||||||||||  || | |    
T  8046030 tatgatcacagcaacaacaaggattaagttttcattctgaacattatattacaagagaattaacattatctttacccatttcccttcagaattctcgtca 8045931  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatag 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  8045930 aaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 8045832  T
Q  266 tttt 269  Q
    ||||    
T  8045831 tttt 8045828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 269
Target Start/End: Original strand, 11847964 - 11848173
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||  | ||||||| |||||||||||| | | |||||||||| |||| |    
T  11847964 tatgatcacagcaacaacaaagattaagttttcattctgaacattatattataaaaggattaacatgatcattacccattcctcttcagaatcgtcatca 11848063  T
Q  166 aaccctaaccctcaa------tttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
    |||||||||||||||      || ||||| |||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11848064 aaccctaaccctcaattgattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcaccctta 11848163  T
Q  260 ccatagtttt 269  Q
    || |||||||    
T  11848164 ccttagtttt 11848173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 53483646 - 53483756
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctca-atttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagt 249  Q
    ||||||||||||| |||||||||   ||| |||  ||||| |||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  53483646 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagt 53483744  T
Q  250 ctcacccttacc 261  Q
    ||||||||||||    
T  53483745 ctcacccttacc 53483756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 15408139 - 15408191
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 15408191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 8834895 - 8834948
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacc 8834948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 13888641 - 13888694
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacc 13888694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 14486661 - 14486712
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| |||||||| |||||  ||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacc 14486712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 15245215 - 15245268
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| ||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacc 15245268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 15308120 - 15308171
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| ||||||||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcaccctta 15308171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 27906266 - 27906315
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
    ||||||||||||||||| |||||||| ||||| ||||| || ||||||||    
T  27906266 aattttcagaaattatacattatgatcattgaaagataatcccaccctta 27906315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 15747592 - 15747552
Alignment:
Q  229 ttatgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||| ||||||||||| |||||||||||||||| |||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagtttt 15747552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 14595 - 14399
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| || || ||||||||||||||||| |||||| | |||||||  ||||||||| |||||||||||| ||||||||||||||||||| |    
T  14595 tatgatcacagcaacagcatagattaagttttcattcggaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatca 14496  T
Q  166 aaccctaaccctcaatttattttcc-aaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14495 aaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 14399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 949 - 746
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    |||||||||| || |||||| ||||||||||| || ||||||||||||||||||| | |||| || |||||||||||| ||||||||| |||| |||| |    
T  949 tatgatcacatcaacaacaa-gattaagtttttatcctgaacattatattacaagagtattatcatgatcattacccatttcccttcataatcctcatca 851  T
Q  166 aaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccata 264  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  850 aaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 751  T
Q  265 gtttt 269  Q
    |||||    
T  750 gtttt 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 87 - 269
Target Start/End: Original strand, 11219 - 11401
Alignment:
Q  87 gattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatt-tat 185  Q
    ||||||| ||||||| ||||||| | |||||||  ||||||||| ||||||||| || |||||| |||||||||||| |||||||||||||||||| |||    
T  11219 gattaagatttcattttgaacatcacattacaacagaattaacatgatcattactca-ttccctccagaatcatcatcaaaccctaaccctcaattctat 11317  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11318 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 11401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 44477500 - 44477674
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||    
T  44477500 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttat 44477598  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44477599 tttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 44477674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 44492658 - 44492832
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||    
T  44492658 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttat 44492756  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44492757 tttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 44492832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 85 - 269
Target Start/End: Original strand, 23866490 - 23866674
Alignment:
Q  85 aagattaagttttcattctgaacattatattacaagg-gaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt 183  Q
    ||||||||||||  |||||||||||||||||||||   ||||||||| |||||||||||| ||| ||||| ||||||||| |||||||||||||||||||    
T  23866490 aagattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattt 23866589  T
Q  184 attttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  23866590 attttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagtttt 23866674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 8727911 - 8727736
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||||||||||| |||||||  ||||||||| ||||| |||||| | ||| ||||||||||| | |||||||||||||||||||||    
T  8727911 agattaagttttcattctgaacattacattacaacagaattaacatgatcaataccca-tacccctcagaatcatcgtcaaaccctaaccctcaatttat 8727813  T
Q  186 tttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
     |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  8727812 cttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagggataatctcacccttacc 8727736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 17054533 - 17054642
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 17054631  T
Q  251 tcacccttacc 261  Q
    |||||||||||    
T  17054632 tcacccttacc 17054642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 317
Target Start/End: Original strand, 18614271 - 18614380
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctctgactatac 306  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||  |||||||| |||||||||| || | |||||||||||| |||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta-atttagaagaaaacgcacaatgatcggattctctgactctac 18614369  T
Q  307 ttgttcttctc 317  Q
    |||||||||||    
T  18614370 ttgttcttctc 18614380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 23482117 - 23482056
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23482056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 27941032 - 27940946
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaa 173  Q
    ||||||| |||||||||||||||||| |||||||  ||||||||| ||||| ||||| |||||| ||||||||||||| |||||||||    
T  27941032 agattaaattttcattctgaacattacattacaacagaattaacatgatcaataccc-attcccctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 39364919 - 39364972
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacc 39364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 29643440 - 29643389
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacc 29643389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 14056619 - 14056567
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||| ||| | | ||| ||||||||||||||||||||||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttacc 14056567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 25111976 - 25112028
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||| ||| | | ||| ||||||||||||||||||||||||||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttacc 25112028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 24320725 - 24320674
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 24320674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 21931696 - 21931749
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| ||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacc 21931749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 6483595 - 6483769
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||    
T  6483595 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttat 6483693  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6483694 tttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 6483769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 6487062 - 6487236
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| |||||||  ||||||  ||||||||| ||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||    
T  6487062 agattaagttttcattctaaacattacgttacaacagaattaacatgatcaataccca-ttcccctcaaaatcatcatcaaaccctaaccctcaatttat 6487160  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6487161 tttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 6487236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 19661651 - 19661457
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    |||||||||| || ||| | |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |    
T  19661651 tatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatca 19661553  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  19661552 aaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacc 19661457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 96 - 269
Target Start/End: Original strand, 26583715 - 26583886
Alignment:
Q  96 ttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttattttccaaaac 195  Q
    |||||||||||||| |  ||||||   | |||||| |||||||||||  ||||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  26583715 ttcattctgaacatcactttacaacatatttaacatgatcattaccct-ttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaac 26583813  T
Q  196 taagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 269  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26583814 tatgcaattaggtcaa-tttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 26583886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 261
Target Start/End: Original strand, 23878885 - 23879059
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||| ||||||||||||||| | |||||||   |||||||| ||||||||||| |||||| ||||||||||||   |||||||||||||||||||     
T  23878885 agattaagatttcattctgaacatcacattacaacataattaacatgatcattaccccattcccctcagaatcatca-acaaccctaaccctcaatttaa 23878983  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |   |||   ||||||||||||||||||||  ||||||||| || || |||| |||||||||||||||||||||||    
T  23878984 tcctcaaggttaagcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacc 23879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 23089253 - 23089058
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| ||  | |||||||| |||||||| |||| | | |||||||   |||||||| |||||||||||| | ||||| ||||||||||| |    
T  23089253 tatgatcacagcaacagtatagattaagatttcattccgaacgtcacattacaacataattaacatgatcattacccattcccctt-agaatcatcatca 23089155  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||  |   |||   ||||||||||||||||||||| ||||||| | |||||  |||| |||||||||||||||||||||||    
T  23089154 aaccctaaccctcaattttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacc 23089058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 23101641 - 23101466
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||| |||||||| |||| | | |||||||   |||||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||||||      
T  23101641 agattaagatttcattccgaacgtcacattacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttta 23101543  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacc 261  Q
    |   |||   ||| ||||||||||||||||| ||||||| | |||||  |||| |||||||||||||||||||||||    
T  23101542 tcctcaaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacc 23101466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 5706137 - 5706027
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctca-atttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagt 249  Q
    ||||||||||||| |||||||||   ||| |||  ||||| |||||||  |||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  5706137 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattaatgagagatagt 5706039  T
Q  250 ctcacccttacc 261  Q
    ||||||||||||    
T  5706038 ctcacccttacc 5706027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 23265133 - 23265194
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23265194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 23280201 - 23280262
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 23280262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 21908353 - 21908411
Alignment:
Q  203 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacc 21908411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 24661576 - 24661629
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||| |||||||| || ||||| ||| ||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacc 24661629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 10577 - 10628
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 10628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 25180984 - 25180933
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 25180933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 26885133 - 26885233
Alignment:
Q  161 cattaaaccctaaccctcaatttattttccaa-aactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
    ||||| |||||||  |||||||| || ||||| |||||  | ||||| | ||||||||||||||||| |||| ||||||||| ||||| || ||||||||    
T  26885133 cattataccctaattctcaattttttctccaagaactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccaccctta 26885231  T
Q  260 cc 261  Q
    ||    
T  26885232 cc 26885233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 2095 - 1893
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||| |||||||||  ||||||||||| |  || ||| ||||||||| |    
T  2095 tatgatcacagcaacaacaaggattaagttttcattatgaacattaaattacaagagaattaacataatcattacccatt--ccatcaaaatcatcatca 1998  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccata 264  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  1997 aaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttacctta 1898  T
Q  265 gtttt 269  Q
    |||||    
T  1897 gtttt 1893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 8772 - 8570
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||| |||||||||  ||||||||||| |  || ||| ||||||||| |    
T  8772 tatgatcacagcaacaacaaggattaagttttcattttgaacattaaattacaagagaattaacataatcattacccatt--ccatcataatcatcatca 8675  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccata 264  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  8674 aaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttacctta 8575  T
Q  265 gtttt 269  Q
    |||||    
T  8574 gtttt 8570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 86 - 315
Target Start/End: Complemental strand, 20437202 - 20436971
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||||||||||| |||||||   |||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  20437202 agattaagttttcattctgaacattacattacaacataattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttat 20437104  T
Q  186 tttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttt--tagaagaaacgcac 282  Q
     |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    ||| ||| ||||    
T  20437103 cttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatttagatgaacaaaagcac 20437004  T
Q  283 aacgaccagattctctgactatacttgttcttc 315  Q
    ||| | | ||||||||||||  |||||||||||    
T  20437003 aacaatcggattctctgactccacttgttcttc 20436971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 41111977 - 41112094
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtc 41112075  T
Q  251 tcacccttaccatagtttt 269  Q
    ||||||||||| |||||||    
T  41112076 tcacccttaccttagtttt 41112094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 32651563 - 32651680
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctct 298  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||| | ||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta-atttagaagaaaacacacaacgatcggattctct 32651661  T
Q  299 gactatacttgttcttctc 317  Q
    ||||  |||||||||||||    
T  32651662 gactccacttgttcttctc 32651680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 18712790 - 18712851
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacc 18712851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 19663572 - 19663520
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacc 19663520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 10811839 - 10811786
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacc 10811786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 20805320 - 20805373
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacc 20805373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 11158093 - 11158145
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacc 11158145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 20851187 - 20851136
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 20851136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 20857814 - 20857763
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 20857763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 21706276 - 21706327
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 21706327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 21710818 - 21710869
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 21710869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 269
Target Start/End: Original strand, 149 - 350
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    |||||||||| ||  |||| ||||||||| |||| ||||||||  ||| ||||||  |||||||| |||||||||||| ||||| ||||||||||||| |    
T  149 tatgatcacatcaataacatagattaagtcttcaatctgaacaccataatacaagaaaattaacatgatcattaccca-ttcccctcagaatcatcatca 247  T
Q  166 aaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatag 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  248 aaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaattatagattatggttattgagagatagtctcacccttaccttag 346  T
Q  266 tttt 269  Q
    ||||    
T  347 tttt 350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 182 - 319
Target Start/End: Original strand, 904 - 1041
Alignment:
Q  182 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgca 281  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagttttagaagaaacgca 1003  T
Q  282 caacgaccagattctctgactatacttgttcttctctc 319  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1004 caacgaccggattctctgactatacttgttcttctctc 1041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 182 - 319
Target Start/End: Original strand, 8049 - 8186
Alignment:
Q  182 ttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaagaaacgca 281  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagttttagaagaaacgca 8148  T
Q  282 caacgaccagattctctgactatacttgttcttctctc 319  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  8149 caacgaccggattctctgactctacttgttcttctctc 8186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 846 - 899
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaa 119  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| | |||||||    
T  846 tatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaa 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 7991 - 8044
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaa 119  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| | |||||||    
T  7991 tatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaa 8044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 10374 - 10199
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| ||||||||    
T  10374 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttat 10276  T
Q  186 tttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
     |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10275 cttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttacc 10199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 1704 - 1529
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||| ||||||||    
T  1704 agattaagttttcattctaaacattacattacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttat 1606  T
Q  186 tttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
     |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1605 cttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttacc 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 67 - 269
Target Start/End: Original strand, 18026 - 18229
Alignment:
Q  67 atgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagg-gaattaacacgatcattacccaattcccttcagaatcatcatta 165  Q
    |||||||||||| ||||| || |||||||||||||||| |||| | |||||||   ||||||||| || ||||||| | ||||| | |||||||||||||    
T  18026 atgatcacagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgttagaatcatcatta 18124  T
Q  166 aaccctaaccctcaatttattttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccata 264  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  18125 aaccttaaccctcaatttattttcctaaagctaagcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttacctta 18224  T
Q  265 gtttt 269  Q
    |||||    
T  18225 gtttt 18229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 125 - 269
Target Start/End: Original strand, 30772 - 30917
Alignment:
Q  125 ttaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaattt-attttccaaaactaagcaattaggtcaattttcagaaatt 223  Q
    |||||| |||| |||| | |||||| ||| ||||||||| ||||||||| ||||||||| |  ||||||||||| |||||||||||||||||||||||||    
T  30772 ttaacatgatcgttacaccattcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaatt 30871  T
Q  224 atagattatgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  30872 atagattatgattattgagagatagtctcacccttaccttagtttt 30917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 1845 - 1728
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 1747  T
Q  251 tcacccttaccatagtttt 269  Q
    ||||||||||| |||||||    
T  1746 tcacccttaccttagtttt 1728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 5868 - 5751
Alignment:
Q  151 tcagaatcatcattaaaccctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||||||||| ||||||||||  |||  ||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtc 5770  T
Q  251 tcacccttaccatagtttt 269  Q
    ||||||||||| |||||||    
T  5769 tcacccttaccttagtttt 5751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 3490 - 3296
Alignment:
Q  68 tgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagggaattaacacgat-cattacccaattcccttcagaatcatcattaa 166  Q
    ||||||||||| ||  | |||||||| ||||||||||||||| | |||||||   |||||||| ||| ||||||||| ||||| ||||||||||||| ||    
T  3490 tgatcacagcaacagtatagattaagatttcattctgaacatcacattacaacaaaattaacatgattcattaccca-ttcccctcagaatcatcatcaa 3392  T
Q  167 accctaaccctcaatttattttccaaaactaagcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||  |  ||||   ||||||||||||||||||||| ||||||| | |||||  |||| |||||||||||||||||||||||    
T  3391 accctaaccctcaattttatccccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacc 3296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 261
Target Start/End: Complemental strand, 3800 - 3625
Alignment:
Q  86 agattaagttttcattctgaacattatattacaagggaattaacacgatcattacccaattcccttcagaatcatcattaaaccctaaccctcaatttat 185  Q
    |||||||| |||||||| |||||| | |||||||   |||||||| |||||||||||| | ||| ||||||||||||| |||||||||||||||||||      
T  3800 agattaagatttcattccgaacatcacattacaacataattaacatgatcattaccca-tccccctcagaatcatcatcaaaccctaaccctcaatttta 3702  T
Q  186 tttccaaaactaagcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacc 261  Q
    |   |||   ||||||||||||||||||||| ||||||| | |||||  |||| |||||||||||||||||||||||    
T  3701 tcctcaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacc 3625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 116887 - 117004
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctct 298  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||  |||||||| |||| |||||||| | ||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta-atttagaagaaaacacacaacgatcggattctct 116985  T
Q  299 gactatacttgttcttctc 317  Q
    ||||  ||||||| |||||    
T  116986 gactccacttgtttttctc 117004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 45386 - 45278
Alignment:
Q  153 agaatcatcattaaaccctaaccctca-atttattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtct 251  Q
    ||||||||||| |||||||||   ||| |||  ||||| |||||||  |||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtct 45288  T
Q  252 cacccttacc 261  Q
    ||||||||||    
T  45287 cacccttacc 45278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 16811 - 16872
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacc 16872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 72 - 11
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacc 11  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 13623 - 13684
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacc 13684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 101992 - 101931
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacc 101931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 17643 - 17695
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttacc 17695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 40587 - 40535
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 40535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 135473 - 135525
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttacc 135525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 22646 - 22596
Alignment:
Q  211 attttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttacc 22596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 15052 - 14942
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctc-tgactatac 306  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||| ||   ||||||| ||||||||||||| | ||||| | || || |||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta--attagaagaaaacgcacaacgatcggattcccttggctctac 14955  T
Q  307 ttgttcttctctc 319  Q
    |||||||||||||    
T  14954 ttgttcttctctc 14942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 34331 - 34279
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacc 34279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 12296 - 12349
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacc 12349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 1378 - 1438
Alignment:
Q  201 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||| |||||||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacc 1438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 3519 - 3558
Alignment:
Q  66 tatgatcacagcagcaacaaagattaagttttcattctga 105  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  3519 tatgatcacagcaacaacaaagattaagttttcattctga 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 39563 - 39510
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||| ||||||||| |||||||| |||||||| ||| ||||||||||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacc 39510  T

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Target: scaffold0815 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 1453 - 1501
Alignment:
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    |||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttacc 1501  T

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Target: scaffold1318 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 1967 - 1916
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 1916  T

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Target: scaffold0348 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 9336 - 9387
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttacc 9387  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 10239 - 10290
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttacc 10290  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 135438 - 135489
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||| ||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttacc 135489  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 493082 - 493032
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||||||| |||| ||||||||| ||||| |||||||||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttacc 493032  T

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Target: scaffold2054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 680 - 774
Alignment:
Q  176 ctcaatttattttccaaaactaagcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccatagtttt 269  Q
    |||||||||||||| | |||||  |  |||||| |||||| ||||||||||| |||| ||| ||||| ||||| || |||||||||| |||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagtttt 774  T

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Target: scaffold0609 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 5922 - 5861
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||| | ||||||||||||||||| ||||| || ||||| ||||| || ||||||||||    
T  5922 caattagattaattttcagaaattatatattataatcattgaaagataatcccacccttacc 5861  T

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Target: scaffold0335 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 2684 - 2631
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacc 261  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| ||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacc 2631  T

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Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 69749 - 69857
Alignment:
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttaccatagttttagaag-aaacgcacaacgaccagattctc-tgactatacttg 309  Q
    |||||| |||||||| |||| ||| ||||| || |||||||||||||||| ||  |||||||| |||||| |||||| |  |||||| || || ||||||    
T  69749 ttttcataaattatatattaagatcattgaaagttagtctcacccttacctta-atttagaagaaaacgcgcaacgatcgaattctcttggctctacttg 69847  T
Q  310 ttcttctctc 319  Q
    ||||||||||    
T  69848 ttcttctctc 69857  T

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