View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_36 (Length: 322)
Name: NF20408_low_36
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 54879943 - 54879637
Alignment:
| Q |
18 |
atattgaacaaatgagtcattgaaataaa---------aaatcaataaaacgtattcaattacataaaaatgaaagataaactggtaacaaactggaccg |
108 |
Q |
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| T |
54879943 |
atattgaacaaatgagtcattgaaataaatataaaaaaaaattaataaaacgtattcaattacacaaaaatgaaagataaaccggtaacaaactgcgtcg |
54879844 |
T |
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| Q |
109 |
ctaaacctttttgaactcgttgtagaatattcacatcctctaaaactaaaaagctaaaagtatcaaacataaatggtattaaaacatgtcgatt----gt |
204 |
Q |
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| T |
54879843 |
ctaaacctttttgaactcgttgtagaatattcacatcctctaacactaaaaagtcaaaagtatcaaacataaatgatattaaaacatgttgattgtcagt |
54879744 |
T |
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| Q |
205 |
caaagctcactttctcgtatttgaacatttttcttaaaattgtttctagaggtgttgtctaatagtaaatgctctgatactgaaaaaacctcattaaatt |
304 |
Q |
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|||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54879743 |
caaatcttactttctcatatttgaacatttttcttaaaattgtttctagaggtgttgtctaatagtaaatgctctgatactgaaaaaacctcattaaatt |
54879644 |
T |
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| Q |
305 |
tgttcat |
311 |
Q |
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| T |
54879643 |
tgttcat |
54879637 |
T |
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