View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20408_low_38 (Length: 308)
Name: NF20408_low_38
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 2337392 - 2337668
Alignment:
| Q |
17 |
aattaccacaatagttggattataattttagtagaccttgtccgttacactgaagttcttatgtctgataggcataactgtttaaaaagaaaaatttctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2337392 |
aattaccacaatagttggattataattttagtagaccttgtccgttacactgaagttcttatgtctgataggcataactgtttaaaaagaaaaatttctg |
2337491 |
T |
|
| Q |
117 |
atctttttccttgtatgtgctacatgttgtaatagttatcatatcattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2337492 |
atctttttccttgtatgtgctacatgttgtaatagttatcatatcattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatcc |
2337591 |
T |
|
| Q |
217 |
atttagacttgtaggagttggattgtcggtgtggactcttgcgaccttcttttgcggtttttctttcaatttctggt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2337592 |
atttagacttgtaggagttggattgtcggtgtggactcttgcgaccttcttttgcggtttttctttcaatttctggt |
2337668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 2344429 - 2344561
Alignment:
| Q |
161 |
cattaactgacataagaatcctttctcacaattcatatattttgcagtgtaaatccatttagacttgtaggagttggattgtcggtgtggactcttgcga |
260 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||| ||||| |||||||| | ||||| || || | |
|
|
| T |
2344429 |
cattaaatgtcataagaatcctttctcacaattcatgtatttcgcagtgtcaatccatttaaacttataggatccggattgtcaatttggacactagcaa |
2344528 |
T |
|
| Q |
261 |
ccttcttttgcggtttttctttcaatttctggt |
293 |
Q |
| |
|
||||||| || ||||||||||| |||||||||| |
|
|
| T |
2344529 |
ccttcttctgtggtttttcttttaatttctggt |
2344561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 36798809 - 36798707
Alignment:
| Q |
191 |
attcatatattttgcagtgtaaatccatttagacttgtaggagttggattgtcggtgtggactcttgcgaccttcttttgcggtttttctttcaatttct |
290 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||| | |||||||||||||| || |||||| |||| ||||| | || ||| ||||||||||||||| |
|
|
| T |
36798809 |
attcctatattttgcagtgtaaacccctttagacttattggagttggattgtcagtttggactgttgcaaccttatgctgtggtctttctttcaatttct |
36798710 |
T |
|
| Q |
291 |
ggt |
293 |
Q |
| |
|
||| |
|
|
| T |
36798709 |
ggt |
36798707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University