View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_40 (Length: 279)
Name: NF20408_low_40
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 14039573 - 14039306
Alignment:
| Q |
1 |
atgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtga |
100 |
Q |
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| T |
14039573 |
atgatgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtga |
14039474 |
T |
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| Q |
101 |
tgagtaatggcggaggtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaa |
200 |
Q |
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| T |
14039473 |
tgagtaatggcggaggtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaa |
14039374 |
T |
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| Q |
201 |
gccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
268 |
Q |
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| T |
14039373 |
gccaagttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
14039306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 18954540 - 18954277
Alignment:
| Q |
5 |
tgatcgaaccacaaggagcaaccggaggcggaaactgcatgacaacaggttgcatggtggatttgaacgcggcatgtccaaccgagttgaaagtgatgag |
104 |
Q |
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| T |
18954540 |
tgatcaaaccacgtggagcaaccgggggtggaaactgcatgacaacaggttgcatggtggatttgaacacggcgtgtccaaccgagttgaaagtgatgag |
18954441 |
T |
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| Q |
105 |
taatggcggaggtgtagcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagcca |
204 |
Q |
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| T |
18954440 |
taacggaagcagtgtagcgtgtaaaagcgcgtgtgaagcgtttggagatctgcaatattgttgtaatggcgcttacgctactccagatacatgcaagcca |
18954341 |
T |
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| Q |
205 |
agttcatactcacagtttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
268 |
Q |
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| T |
18954340 |
agttcgtactcacaattctttaagagtgcatgtccacgtgcttatagttatgcttatgatgatg |
18954277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 268
Target Start/End: Complemental strand, 31945163 - 31945019
Alignment:
| Q |
124 |
tgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagtttt |
223 |
Q |
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| T |
31945163 |
tgtaaaagcgcgtgcgaagcctttggtgatccattgtattgttgcaatggcgcttatggaactccgcagacttgtaagccaagttcatactcgcagttct |
31945064 |
T |
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| Q |
224 |
tcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
268 |
Q |
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| T |
31945063 |
tcaagagcgcgtgtccacgcgcttatagctatgcttatgatgatg |
31945019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 8798177 - 8798324
Alignment:
| Q |
121 |
gcgtgtaaaagcgcgtgtgaagcgtttggggatccacaatattgttgtagtggcgcttacgcttctccaaatacatgcaagccaagttcatactcacagt |
220 |
Q |
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| T |
8798177 |
gcgtgtaaaagcgcgtgtgaagcgtttggggatccgcaatattgctgcagtggcgcttatggttccccggatacgtgtaaaccaagttcctactcgcagt |
8798276 |
T |
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| Q |
221 |
ttttcaagagtgcttgtcctcgcgcttatagctacgcttatgatgatg |
268 |
Q |
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|||| |||||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
8798277 |
tttttaagagtgcgtgtccacgcgcttatagttacgcttatgatgatg |
8798324 |
T |
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