View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_47 (Length: 247)
Name: NF20408_low_47
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 54918944 - 54918739
Alignment:
| Q |
23 |
tatgaaacgattaacccttgaaaaatggaagtagtctaatgagtacaattattgagttaacattggaaaatgatagtagttcaatgagtacaaatttcca |
122 |
Q |
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| T |
54918944 |
tatgaaacgattaacc-ttgaaaaatgaaagtagtctaatgagtacaattattgagttagcattggaaaatgatagtagttcaatgagtacaaatttcca |
54918846 |
T |
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| Q |
123 |
acgagaattgaatgatgataccttggaaaatggcattaaggattctatgcacagaaaaatggttttatattttttgttctatatatagttttggttcatg |
222 |
Q |
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| T |
54918845 |
atgagaattgaaagatgataccttggaaaatggcattaaggattctatgcacagaaaaatggttttatattttttgttctatatatagttttggttcatg |
54918746 |
T |
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| Q |
223 |
tcaaaat |
229 |
Q |
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| T |
54918745 |
tcaaaat |
54918739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 54922001 - 54921930
Alignment:
| Q |
23 |
tatgaaacgattaacccttgaaaaatggaagtagtctaatgagtacaattattgagttaacattggaaaatg |
94 |
Q |
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| T |
54922001 |
tatgagacgattaagccttggaaaatggtagtagtctaatgactacaattatggagttagcattggaaaatg |
54921930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 166
Target Start/End: Complemental strand, 54922227 - 54922126
Alignment:
| Q |
65 |
gtacaattattgagttaacattggaaaatgatagtagttcaatgagtacaaatttccaacgagaattgaatgatgataccttggaaaatggcattaagga |
164 |
Q |
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| T |
54922227 |
gtacaatttgtgagttagaattggaaaatgatagtagtataatgagagtaaatttcaaatgagtgatgaatgattaaactttggaaaatgacattaagga |
54922128 |
T |
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| Q |
165 |
tt |
166 |
Q |
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|| |
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| T |
54922127 |
tt |
54922126 |
T |
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