View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_48 (Length: 240)
Name: NF20408_low_48
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 3589726 - 3589851
Alignment:
| Q |
106 |
aattgaatatatgaattttcacaaaaatttctatttaaggtccttaaaagtattcttgagatgctcattagcatttctcatttttacaatatatttaatt |
205 |
Q |
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| T |
3589726 |
aattgaatatatgaattttcaccaaaatttctatttaaggtccttaaaagtattcttaagatgctcattagcatttctcatttttacaatatatttaatt |
3589825 |
T |
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| Q |
206 |
aatgttatacaactcaataacatttt |
231 |
Q |
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| T |
3589826 |
aatgttatacaactcaataacatttt |
3589851 |
T |
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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 3589643 - 3589682
Alignment:
| Q |
37 |
attatacagatgattttagatttaatttttacgagcctct |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3589643 |
attatacagatgattttagatttaatttttacgagcctct |
3589682 |
T |
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