View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_49 (Length: 239)
Name: NF20408_low_49
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29580760 - 29580981
Alignment:
| Q |
1 |
tttaagactaatcaataacctattcaaagtagaagtttaatagccttttgaaacagtaattcatatgcaatgtccaactccaaacgcttccatgtggttt |
100 |
Q |
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| T |
29580760 |
tttaagactaatcaataacctattcagagtagaagtttaatagccttttgaaacagtaattcatatgcattgtccaactccaaacgtttccatgtggttt |
29580859 |
T |
|
| Q |
101 |
ttgaaattaattactagtagtattgaannnnnnnnnnnnnnnnnnnaaataacttatatgcatttaaaacacattaatttgtgacttccaatttcttaac |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29580860 |
ttgaaattaattactagtagtattgaa-tttttttttgaattttttaaataacttatatgcatttaaaacacattaatttgtgacttccaatttctaaac |
29580958 |
T |
|
| Q |
201 |
agatatactaatgtgcaccaact |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
29580959 |
agatatactaatgtgcaccaact |
29580981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 29576686 - 29576742
Alignment:
| Q |
155 |
tatatgcatttaaaacacattaatttgtgacttccaatttcttaacagatatactaa |
211 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29576686 |
tatatacatttaaaacacattaatttgtgacttccaatttctaaacagatatactaa |
29576742 |
T |
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