View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20408_low_50 (Length: 236)

Name: NF20408_low_50
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20408_low_50
NF20408_low_50
[»] chr6 (2 HSPs)
chr6 (67-217)||(11006930-11007080)
chr6 (30-58)||(11006819-11006847)
[»] chr1 (2 HSPs)
chr1 (69-218)||(42657958-42658118)
chr1 (156-218)||(27198515-27198577)
[»] chr5 (3 HSPs)
chr5 (145-218)||(27786447-27786520)
chr5 (145-218)||(28594208-28594281)
chr5 (156-217)||(9689123-9689184)
[»] chr4 (4 HSPs)
chr4 (115-218)||(37370624-37370727)
chr4 (145-210)||(28100349-28100414)
chr4 (159-204)||(41762236-41762281)
chr4 (165-217)||(16019146-16019198)
[»] chr7 (3 HSPs)
chr7 (155-218)||(9825205-9825268)
chr7 (155-218)||(10727130-10727193)
chr7 (155-210)||(3634456-3634511)
[»] chr3 (1 HSPs)
chr3 (145-197)||(45926712-45926764)
[»] chr8 (1 HSPs)
chr8 (145-218)||(24318160-24318233)
[»] chr2 (1 HSPs)
chr2 (115-197)||(37981885-37981965)
[»] scaffold0287 (1 HSPs)
scaffold0287 (155-210)||(11574-11629)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 11006930 - 11007080
Alignment:
Q  67 atggaccttactctgtgcacatgaaaactaatgataaaatggaattttgttgggcagcaccgaaaagaaaactgtgagagtctcatagatttttgtgaga 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  ||||||||||||||    
T  11006930 atggaccttactctgtgcacatgaaaactaatgataaaatggaattttgttgggcagcacggaaaagaaaactgcgagagtctctcagatttttgtgaga 11007029  T
Q  167 ttgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaat 217  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  11007030 ttgttgaatgagtattgtgttcacatttttaactaaaatgtcttataaaat 11007080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 11006819 - 11006847
Alignment:
Q  30 gcatatggcagcaatcagtgtttgttatg 58  Q
    |||||||||||||||||||||||||||||    
T  11006819 gcatatggcagcaatcagtgtttgttatg 11006847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 42658118 - 42657958
Alignment:
Q  69 ggaccttactctgtgcacatgaaaactaatgataaaatggaattttgttgggcagcaccgaaaagaaaactgtgagagt-----------ctcatagatt 157  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||||           |||| | |||    
T  42658118 ggaccttactctgtgcacatgaaaactaatgagaaaatggaattttgttggacagcacggaaaagaaaattgtgagagtctcaccaaagtctcacaaatt 42658019  T
Q  158 tttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaatc 218  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  42658018 tttgtgagattgttgaatgagtattgtgttcacatttttaactaaaaagtctcataaaatc 42657958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 27198577 - 27198515
Alignment:
Q  156 tttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaatc 218  Q
    ||||||||||||||||||||||||||| |||||| ||||||| |||| | |||||| ||||||    
T  27198577 tttttgtgagattgttgaatgagtattttgttcatatttttaactaagaagtctcacaaaatc 27198515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 27786520 - 27786447
Alignment:
Q  145 agtctcatagatttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaatc 218  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||| ||||||    
T  27786520 agtctcataaatttttgtgagattgttgaatgagcattttgttcacatttttaactaaaaagtctcacaaaatc 27786447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 28594208 - 28594281
Alignment:
Q  145 agtctcatagatttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaatc 218  Q
    ||||||| | |||||||||||||||||||||||| ||| | |||||||||||| |||||| |||||| ||||||    
T  28594208 agtctcacaaatttttgtgagattgttgaatgagcattttattcacatttttaactaaaaagtctcacaaaatc 28594281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 9689123 - 9689184
Alignment:
Q  156 tttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaat 217  Q
    ||||||||||||||||||||||||||| |||| | ||||||| |||||| |||||| |||||    
T  9689123 tttttgtgagattgttgaatgagtattttgtttatatttttaactaaaaagtctcacaaaat 9689184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 37370624 - 37370727
Alignment:
Q  115 gttgggcagcaccgaaaagaaaactgtgagagtctcatagatttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctcataa 214  Q
    ||||| || ||| |||||||||| |||| |||||| | | |||||||||| ||||||||||||||||| |||||||||||||| ||| || |||||| ||    
T  37370624 gttggacatcacggaaaagaaaattgtgggagtcttacaaatttttgtgaaattgttgaatgagtattttgttcacatttttaactataaagtctcacaa 37370723  T
Q  215 aatc 218  Q
    ||||    
T  37370724 aatc 37370727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 28100349 - 28100414
Alignment:
Q  145 agtctcatagatttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctc 210  Q
    ||||||| | |||||||||||||||||||||||||| | |||||||||||||| |||||| |||||    
T  28100349 agtctcacacatttttgtgagattgttgaatgagtagtgtgttcacatttttaactaaaaagtctc 28100414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 41762281 - 41762236
Alignment:
Q  159 ttgtgagattgttgaatgagtattatgttcacatttttatctaaaa 204  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||    
T  41762281 ttgtgagattgttgaataagtattgtgttcacatttttaactaaaa 41762236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 16019198 - 16019146
Alignment:
Q  165 gattgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaat 217  Q
    |||||||||||||||||| |||| | ||||||| |||||| |||| |||||||    
T  16019198 gattgttgaatgagtattttgtttatatttttaactaaaaagtcttataaaat 16019146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 9825205 - 9825268
Alignment:
Q  155 atttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaatc 218  Q
    |||||||| |||||||||||| |||||||||||||||||||||  ||||| |||||||||||||    
T  9825205 atttttgtaagattgttgaataagtattatgttcacatttttaattaaaaagtctcataaaatc 9825268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 10727130 - 10727193
Alignment:
Q  155 atttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaatc 218  Q
    |||||||| |||||||||||| |||||||||||||||||||||  ||||| |||||||||||||    
T  10727130 atttttgtaagattgttgaataagtattatgttcacatttttaattaaaaagtctcataaaatc 10727193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 3634511 - 3634456
Alignment:
Q  155 atttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctc 210  Q
    ||||| |||||||||||||||||| | | |||||||||||||| |||||| |||||    
T  3634511 attttagtgagattgttgaatgaggaatgtgttcacatttttaactaaaaagtctc 3634456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 45926712 - 45926764
Alignment:
Q  145 agtctcatagatttttgtgagattgttgaatgagtattatgttcacattttta 197  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||||||||||    
T  45926712 agtctcataaatttttgtgagattgttgaatgagcattttgttcacattttta 45926764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 24318233 - 24318160
Alignment:
Q  145 agtctcatagatttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctcataaaatc 218  Q
    ||||||| | |||||||| ||||||||||||||| ||| |||||||||||||| | |||| |||||| ||||||    
T  24318233 agtctcacaaatttttgtaagattgttgaatgagcattttgttcacatttttaaccaaaaagtctcacaaaatc 24318160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 37981965 - 37981885
Alignment:
Q  115 gttgggcagcaccgaaaagaaaactgtgagagtctcatagatttttgtgagattgttgaatgagtattatgttcacattttta 197  Q
    ||||| |||||  |||||||||| ||||||  ||||| | |||| ||||||||||||||||||| ||| ||||||||||||||    
T  37981965 gttggacagcaaggaaaagaaaattgtgag--tctcacaaatttgtgtgagattgttgaatgagcattttgttcacattttta 37981885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 11574 - 11629
Alignment:
Q  155 atttttgtgagattgttgaatgagtattatgttcacatttttatctaaaatgtctc 210  Q
    ||||| |||||||||||||||||| | | |||||||||||||| |||||| |||||    
T  11574 attttagtgagattgttgaatgaggaatgtgttcacatttttaactaaaaagtctc 11629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University