View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_52 (Length: 229)
Name: NF20408_low_52
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 5316927 - 5316729
Alignment:
| Q |
13 |
agcagagaaaatggaaaataaaaaagaatgaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattcc |
112 |
Q |
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| T |
5316927 |
agcagaaaaaatggaaaataaaaaagaatgaagaataaggattaagcataccataagataagaccatgaccatgtcactatctattacagttggaattct |
5316828 |
T |
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| Q |
113 |
gtgagcaacggttataaccgtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatc |
211 |
Q |
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| T |
5316827 |
gtgagcaacggttataaccgtgcattctgaaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatc |
5316729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 5279168 - 5279367
Alignment:
| Q |
13 |
agcagagaaaatggaaaataaaaaagaatgaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattcc |
112 |
Q |
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| T |
5279168 |
agcagaaaaaatggaaaataaaaatgaatgaagaataaggattaagcataccataagataagaccagaaccatgtcactgtctattacagttggaactct |
5279267 |
T |
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| Q |
113 |
gtgagcaacggttataaccgtgcattctgcaaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatct |
212 |
Q |
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| T |
5279268 |
gtgagccacagttataactgtgcattcttcgaattcttgtctaattactctttgtagaattgcatctgtggctgagtcaatggatgctgttgcttcatct |
5279367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 211
Target Start/End: Complemental strand, 15128882 - 15128713
Alignment:
| Q |
42 |
gaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattccgtgagcaacggttataaccgtgcattctg |
141 |
Q |
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| T |
15128882 |
gaagaataaggaattaacataccataagatagaaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattctt |
15128783 |
T |
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| Q |
142 |
caaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatc |
211 |
Q |
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| T |
15128782 |
caaattcttgtctaattattctttgtagaatcgcatctgtggctgaatcaatggatgcagtagcttcatc |
15128713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 211
Target Start/End: Complemental strand, 5310250 - 5310081
Alignment:
| Q |
42 |
gaagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattccgtgagcaacggttataaccgtgcattctg |
141 |
Q |
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| T |
5310250 |
gaagaataaggaaataacataccataagataggaccatgaccatgtcactgtctatgacagttggaactctgtgagccacagttatgactgtgcattctg |
5310151 |
T |
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| Q |
142 |
caaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatc |
211 |
Q |
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| T |
5310150 |
caaattcttgtctaattactctttgtagtattgcatctgtggaagagtcaatagaggcagtagcttcatc |
5310081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 46 - 208
Target Start/End: Original strand, 14946202 - 14946364
Alignment:
| Q |
46 |
aataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattccgtgagcaacggttataaccgtgcattctgcaaa |
145 |
Q |
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| T |
14946202 |
aataaggaattaacataccataagataggaccatgaccatgtcactgtctattacagttggaactctgtgagcaacagttataactgtgcattcttcaaa |
14946301 |
T |
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| Q |
146 |
ttcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttc |
208 |
Q |
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| T |
14946302 |
ctcttgtctgattattctttgtagaatggcatctgtggctgaatcaatggatgcagtagcttc |
14946364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 5286941 - 5287093
Alignment:
| Q |
59 |
cataccataaattaagaccatgaccatgtcactatctattacagttggaattccgtgagcaacggttataaccgtgcattctgcaaattcttgtctaatt |
158 |
Q |
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|||||||||| || |||||||||||||||||| |||||||||||||||| || |||||| || |||||||| |||||||||| |||||||||||||||| |
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| T |
5286941 |
cataccataagataggaccatgaccatgtcactgtctattacagttggaactctgtgagccacagttataactgtgcattctgaaaattcttgtctaatt |
5287040 |
T |
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| Q |
159 |
actctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatc |
211 |
Q |
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|||||||||||||| ||||| || |||||||||||||| || || |||||||| |
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| T |
5287041 |
actctttgtagaattgcatccgtcgcagagtcaatggatgctgttgcttcatc |
5287093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 5347915 - 5348051
Alignment:
| Q |
75 |
accatgaccatgtcactatctattacagttggaattccgtgagcaacggttataaccgtgcattctgcaaattcttgtctaattactctttgtagaatgg |
174 |
Q |
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||||||||||| ||||| || || |||||||||| || ||||| || |||||||| |||||||||||||||||||||||||||| | |||||||||| | |
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| T |
5347915 |
accatgaccatatcactgtcaataacagttggaactctatgagctacagttataactgtgcattctgcaaattcttgtctaattattttttgtagaatag |
5348014 |
T |
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| Q |
175 |
catctgtggcagagtcaatggaggcagtagcttcatc |
211 |
Q |
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| T |
5348015 |
catctgtggcagaatcaatagaggcagtagcttcatc |
5348051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 31523367 - 31523536
Alignment:
| Q |
43 |
aagaataaggattaagcataccataaattaagaccatgaccatgtcactatctattacagttggaattccgtgagcaacggttataaccgtgcattctgc |
142 |
Q |
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||||||||||| | | |||||||||| || || ||||||||||||||| ||||||||||||||||||| |||||||| |||||| || ||||||||||| |
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| T |
31523367 |
aagaataaggaatcaacataccataagataggatcatgaccatgtcactgtctattacagttggaattctgtgagcaatggttattacagtgcattctgc |
31523466 |
T |
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| Q |
143 |
aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggcagtagcttcatct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31523467 |
aaattcttgtctaattactctttgtagaatggcatctgtggcagagtcaatggaggctgtagcttcatct |
31523536 |
T |
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