View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_53 (Length: 228)
Name: NF20408_low_53
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 3414198 - 3414000
Alignment:
| Q |
18 |
ataagttaggagtagtttgttaggggaatgagaatttcttaggggcagtaatcaaactttaaacctctttgtaatttttcaatatttcaatcagtttaaa |
117 |
Q |
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| T |
3414198 |
ataagtaaggagtagtttgttaggggaatgagaatttcttaggggcagtaatcaaactttaaacctcttagtaatttttcaatatttcaatcaatttaaa |
3414099 |
T |
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| Q |
118 |
ttgtgtgtgttttgtgttggacaatgaagataatactttggttcgctcgtcgtgcgtaaaagcaaaattgctttgcggatatgttttattccgagtataa |
217 |
Q |
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| T |
3414098 |
ttgt--gtgttttgtgttggacaatgaagataatactttggtttgctcgtcgtgcgtaaaagtaaaattgctttgccgatatgttttattccaagtctaa |
3414001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 3413708 - 3413612
Alignment:
| Q |
117 |
attgtgtgtgttttgtgttggacaatgaagataatactttggttcgctcgtcgtgcgtaaaagcaaaattgctttgcggatatgt-tttattccgagt |
213 |
Q |
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| T |
3413708 |
attgtgtgtattttgttttggacaatgaagataatactt-ggttcgctcgtcgtgcgtaaaagcaaagttgctttgccgatatatgtttattccgagt |
3413612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 3413505 - 3413426
Alignment:
| Q |
119 |
tgtgtgtgttttgtgttggacaatgaagataatactttggttcgctcgtcgtgcgtaaaagcaaaattgctttgcggatat |
199 |
Q |
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| T |
3413505 |
tgtgtgtattttgttttggacaatgaagataatactt-ggttcgctcgtcgtgcgtaaaagcaaagttgctttgccgatat |
3413426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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