View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_54 (Length: 227)
Name: NF20408_low_54
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_54 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 19430361 - 19430174
Alignment:
| Q |
19 |
atagccttttcccacaaatttatttttctttgtcattacaatcttgtaagattcaaatgacacattaaccccattctttatcaacaagggcactgaatat |
118 |
Q |
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| T |
19430361 |
atagccttttcccacaaatttatttttctttgtcattacaatcttgtcagattcaaatgacacattaaccccattctttatcaacaagggcactgaatat |
19430262 |
T |
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| Q |
119 |
gcctagtagttccagagtctacaacccatttactcacattgatcataattttgacatgagaaatgaccgcaacaattatatcatctccttt |
209 |
Q |
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| T |
19430261 |
gcctagtagt---agagtctacaacccatttactcacattgattataattttgacatgagaaatgaccgcaacaattatatcatctccttt |
19430174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 41397455 - 41397515
Alignment:
| Q |
26 |
tttcccacaaatttatttttctttgtcattacaatcttgtaagattcaaatgacacattaa |
86 |
Q |
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| T |
41397455 |
tttcccacaaagttattgttgtttgtcgttacaatcttgtcagatttaaatgacactttaa |
41397515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 44314641 - 44314597
Alignment:
| Q |
47 |
tttgtcattacaatcttgtaagattcaaatgacacattaacccca |
91 |
Q |
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| T |
44314641 |
tttgtcattacaatcttgtcagattcaaatgacactttaatccca |
44314597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 34098251 - 34098295
Alignment:
| Q |
47 |
tttgtcattacaatcttgtaagattcaaatgacacattaacccca |
91 |
Q |
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| T |
34098251 |
tttgtcattacaatcttgtcagattcaaatgacactttaatccca |
34098295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 39931 - 39975
Alignment:
| Q |
47 |
tttgtcattacaatcttgtaagattcaaatgacacattaacccca |
91 |
Q |
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| T |
39931 |
tttgtcattacaatcttgttagactcaaatgacactttaatccca |
39975 |
T |
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