View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_6 (Length: 486)
Name: NF20408_low_6
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 10 - 467
Target Start/End: Original strand, 47076387 - 47076844
Alignment:
| Q |
10 |
attatactgacctctgataaagtgcaactcgcctctccaaggaaatcctgatcactcagtttcagtgtctgcatgaagtaacataacattcaaactttca |
109 |
Q |
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| T |
47076387 |
attatactgacctctgataaagtgcaactcgcctctccaaggaaatcctgatcactcagtttcagtgtctgcatgaagtaacataacattcaaactttca |
47076486 |
T |
|
| Q |
110 |
gttttcaaatatataaacttcacaaataccattacaactttttattgcaaactaaaagaccctaatgctgaagttttttctttcaagaatttagcaggct |
209 |
Q |
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| T |
47076487 |
gttttcaaatatataaacttcacagataccattacaactttttattgcaaactaaaagaccctaatgctgaagttttttctttcaagaatttagcaggct |
47076586 |
T |
|
| Q |
210 |
ataagtaggccctgtattataccccaatctaaaacaatttatagtgaaattctcattgnnnnnnncagtatagggagaactcatgacttaattaatcata |
309 |
Q |
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| T |
47076587 |
ataagtaggccctgtattttaccccaatctaaaacaatttatagtgaaattctgattgaaaaaaacagtatagggagaactcatgacttaattaatcata |
47076686 |
T |
|
| Q |
310 |
aaatgcttaaaatgcagagttattatatggttggtttacaaaccttggtgggaacacgatgatattttgtgtcaatgtcatacacatgaaacctgaaaga |
409 |
Q |
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| T |
47076687 |
aaatgcttaaaatgcagagttattatatggttggtttacaaaccttggtgggaacacgatgatattttgtgtcaatgtcatacacatgaaacctgaaaga |
47076786 |
T |
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| Q |
410 |
tagcaaaatgagggggagagagttatatataggttaatcaatcaagtcacacagaagc |
467 |
Q |
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| T |
47076787 |
tagcaaaatgagggggagagagttatatataggttaatcaatcaagtcacacagaagc |
47076844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 47058761 - 47058814
Alignment:
| Q |
378 |
gtgtcaatgtcatacacatgaaacctgaaagatagcaaaatgagggggagagag |
431 |
Q |
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| T |
47058761 |
gtgtcaatgtcatacacatgaaatctgaaagaaagcaaaataagggggagagag |
47058814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 18229763 - 18229528
Alignment:
| Q |
13 |
atactgacctctgataaagtgcaactcgcctctccaaggaaatcctgatcactcagtttcagtgtctgcatgaagtaacataac--attcaaactttcag |
110 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| || |||||| ||||||| || |||||||||||||||| |||| |||||||| ||| |
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| T |
18229763 |
atactgacctctgataaagtgcaacttgcctctccaaggaattcttgatcattcagttttagagtctgcatgaagtaacgtaacatattcaaacattcga |
18229664 |
T |
|
| Q |
111 |
ttttcaaatatataaacttcacaaataccattacaactttttattgcaaact-aaaagaccctaatgctgaagttttttctttcaagaatttagcaggct |
209 |
Q |
| |
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|||||||||||||||||||||| | ||||| || ||||||||| |||||| |||| |||||| | ||||||||||||| |||||| ||||||||||| |
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| T |
18229663 |
ttttcaaatatataaacttcaccgacaccatcacggctttttattccaaactaaaaataccctatagttgaagttttttctatcaagagtttagcaggct |
18229564 |
T |
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| Q |
210 |
ataagtaggccctgtattataccccaatctaaaaca |
245 |
Q |
| |
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|||| ||| |||||||||||| ||||||||||| |
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| T |
18229563 |
gcaagttagccttgtattatacccgaatctaaaaca |
18229528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 302 - 415
Target Start/End: Complemental strand, 18229502 - 18229389
Alignment:
| Q |
302 |
taatcataaaatgcttaaaatgcagagttattatatggttggtttacaaaccttggtgggaacacgatgatattttgtgtcaatgtcatacacatgaaac |
401 |
Q |
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||||| ||||||| |||||| ||||| ||| |||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
18229502 |
taatcgtaaaatgtttaaaaggcagatttactatatgattggtttacaaaccttggtgggaacaccgtgatatgatgtgtcaatgtcatacacatgaaat |
18229403 |
T |
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| Q |
402 |
ctgaaagatagcaa |
415 |
Q |
| |
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|||||||| ||||| |
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| T |
18229402 |
ctgaaagaaagcaa |
18229389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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