View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20408_low_7 (Length: 485)
Name: NF20408_low_7
Description: NF20408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20408_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 370 - 471
Target Start/End: Complemental strand, 15433386 - 15433285
Alignment:
| Q |
370 |
tattctggagctcttgttatgttgctaaactgttttactatcacagccatggagatgctgccatttaaaatttgaagtgctgaaacgactaaataatctc |
469 |
Q |
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| T |
15433386 |
tattctggagctctagttatggtgctaaactgttttactatcacagccatggagatgctgccatttaaaatttgaagtgctgaaacgactaaataatctc |
15433287 |
T |
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| Q |
470 |
tg |
471 |
Q |
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| T |
15433286 |
tg |
15433285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 17678551 - 17678677
Alignment:
| Q |
36 |
tgtaattattgagcaatttgttgggtctggtaatagacaaacaattgtttttactgtgcacagattcaggagataatcattactaggaagttatcgaaat |
135 |
Q |
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| T |
17678551 |
tgtaattagtgagggatttgttgggtcaggtaatagacaaacaattgtttctgctgtgta--gattcaggagataatcactactgggaagttatcgaaat |
17678648 |
T |
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| Q |
136 |
tggaacacttcgaaactgatgaaaaggta |
164 |
Q |
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| T |
17678649 |
tggaacactttgaaactgatgaaaaggta |
17678677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 334
Target Start/End: Original strand, 17678740 - 17678897
Alignment:
| Q |
181 |
cttactgtcctactgggtgaattttttgttactgctatctgttattggttttcgaaatgtaacaggaaatagcatatattccataaaatagtaa------ |
274 |
Q |
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| T |
17678740 |
cttactgtactactgattgaatttttt-ttaatgttatcttttattggttttcgatatgtaataggaaatagcatatattccat-aaataataaaccttg |
17678837 |
T |
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| Q |
275 |
tatattttgacatttcaattgtaatcttgctaccttatcttcttcaatctggtttaattc |
334 |
Q |
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| T |
17678838 |
tatattttgacattttaattgcaaccttgctgccttattgtcttcaatctgattcaattc |
17678897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 15079890 - 15079959
Alignment:
| Q |
401 |
gttttactatcacagccatggagatgctgccatttaaaatttgaagtgctgaaacgactaaataatctct |
470 |
Q |
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| T |
15079890 |
gttttactatcacaatcatggagatgctgccatttaaagttttaagtgctgaaaagactaaataatctct |
15079959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 14667570 - 14667438
Alignment:
| Q |
36 |
tgtaattattgagcaatttgttgggtctggtaatagacaaacaattgtttttactgtgcacagattcaggagataatcattactaggaagttatcgaaat |
135 |
Q |
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|||||||| |||| |||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||| |||| ||||||||||||||| |
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| T |
14667570 |
tgtaattagtgagggatttgttgggtcaggtaatagacaaacaattgtttctactgtgta--gattcaggagataatcactactgggaagttatcgaaat |
14667473 |
T |
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| Q |
136 |
tggaacacttcgaaactgatgaaaaggtattaatt |
170 |
Q |
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| T |
14667472 |
tggaacactttgaaactgatgaaaaggtattaatt |
14667438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 181 - 334
Target Start/End: Complemental strand, 14667379 - 14667222
Alignment:
| Q |
181 |
cttactgtcctactgggtgaattttttgttactgctatctgttattggttttcgaaatgtaacaggaaatagcatatattccataaaatagtaa------ |
274 |
Q |
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|||||||| |||||| |||||||||| ||| || ||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||| ||| |
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| T |
14667379 |
cttactgtactactgattgaatttttt-ttaatgttatcttttattggttttcgatatgtaataggaaatagcatatattccat-aaataataaaccttg |
14667282 |
T |
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| Q |
275 |
tatattttgacatttcaattgtaatcttgctaccttatcttcttcaatctggtttaattc |
334 |
Q |
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| T |
14667281 |
tatattttgacattttaattgcaacattgctgccttattgtcttcaatctgattcaattc |
14667222 |
T |
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