View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_high_11 (Length: 392)
Name: NF20409_high_11
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 44953718 - 44954074
Alignment:
| Q |
18 |
tttctcccttttccttgcctttcttggggttcaatttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatag |
117 |
Q |
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| T |
44953718 |
tttctcccttttccttgcctttcttggggttcaatttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatag |
44953817 |
T |
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| Q |
118 |
atgaagtatacaaaaattgaagtataccgaagattgattgacatgagataaacataaaatttgagattccatgccaaatgataatgttcaatattaatag |
217 |
Q |
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| T |
44953818 |
attaagtatacaaaaattgaagtataccgaagattgattgacatgagataaacataaaatttgagattccatgccaaatgataatgttcaatattaatag |
44953917 |
T |
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| Q |
218 |
agttttataattgttttatcattcacaagctcccatctatgttgttgttgtcgtcattgtgattaatgtttgactcttttttatgttatgtgaataaaat |
317 |
Q |
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| T |
44953918 |
agttttataattgttttatcattcacaagctctcatcta---tgttgttgtcgtcattgtgattaatgtttgactcttttgtatgttatgtgaataaaat |
44954014 |
T |
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| Q |
318 |
tactcctctaattcaatctgatacaatgatatttgaagggttgttcgatattgaacatga |
377 |
Q |
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| T |
44954015 |
acctcctctaattcaatctgatacaatgatatttgaagggttgttcgatattgaacatga |
44954074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 44994845 - 44994770
Alignment:
| Q |
52 |
tttaagtactactacatatttcaatttctaacaaattgttgatatatttcaaacaagttgaaatagatgaagtata |
127 |
Q |
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|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44994845 |
tttatgtactactacatatgtcaatttctgacaaattgttgatatatttcaaacaggttgaaatagatgaagtata |
44994770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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