View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_high_14 (Length: 378)
Name: NF20409_high_14
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 5438639 - 5438746
Alignment:
| Q |
135 |
ttgattgaataatcaaattaatatgcaatactggttcaacccatgatatgtaaaaggagctaaatgctttacgacattaataaaactgattttaagagat |
234 |
Q |
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| T |
5438639 |
ttgattgaataatcaaactaatatgcaatactagttcaacccatgatatgtaaaaggagctaaatgctttcctacattaataaaactgattttaagagat |
5438738 |
T |
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| Q |
235 |
ttgatgac |
242 |
Q |
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| T |
5438739 |
ttgatgac |
5438746 |
T |
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Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 5438557 - 5438651
Alignment:
| Q |
18 |
cccttgttgtttatctccatcattaccatagacactttggttcccaaagaaaactgtaaaaacataatagtattagattaagttgattgaataat |
112 |
Q |
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| T |
5438557 |
cccttgttgtttatctccatcattaccatagacactttggttcccaaagaaaactgcaaaaacataatagtattagattaagttgattgaataat |
5438651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 5438809 - 5438867
Alignment:
| Q |
305 |
cattttacaaatgactttaattagttctcacttttttgagatgtaattagttctctgtg |
363 |
Q |
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| T |
5438809 |
cattttacaaatgactttaattagttctcacttttttgagatgtaattagttctctgtg |
5438867 |
T |
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