View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20409_high_16 (Length: 349)

Name: NF20409_high_16
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20409_high_16
NF20409_high_16
[»] chr2 (7 HSPs)
chr2 (103-233)||(29455275-29455407)
chr2 (17-88)||(29455477-29455548)
chr2 (17-88)||(43564267-43564338)
chr2 (103-148)||(43564151-43564196)
chr2 (48-88)||(7574085-7574125)
chr2 (48-88)||(41646702-41646742)
chr2 (48-88)||(16668680-16668720)
[»] chr8 (6 HSPs)
chr8 (18-88)||(918919-918989)
chr8 (48-88)||(8150485-8150525)
chr8 (48-88)||(10186462-10186502)
chr8 (48-88)||(11428136-11428176)
chr8 (107-140)||(919075-919108)
chr8 (48-84)||(20172070-20172106)
[»] chr7 (6 HSPs)
chr7 (304-349)||(44954051-44954096)
chr7 (48-88)||(5768058-5768098)
chr7 (48-88)||(25419569-25419609)
chr7 (48-88)||(39066864-39066904)
chr7 (48-88)||(47233816-47233856)
chr7 (48-84)||(44393780-44393816)
[»] scaffold0516 (1 HSPs)
scaffold0516 (48-88)||(3355-3395)
[»] chr6 (2 HSPs)
chr6 (48-88)||(13433447-13433487)
chr6 (48-88)||(16712103-16712143)
[»] chr5 (3 HSPs)
chr5 (48-88)||(36991151-36991191)
chr5 (48-88)||(21605061-21605101)
chr5 (52-88)||(37301986-37302022)
[»] chr4 (8 HSPs)
chr4 (48-88)||(2504995-2505035)
chr4 (48-88)||(46092411-46092451)
chr4 (48-88)||(46134936-46134976)
chr4 (48-88)||(53830499-53830539)
chr4 (48-88)||(20036391-20036431)
chr4 (48-88)||(34737793-34737833)
chr4 (48-88)||(5430821-5430861)
chr4 (48-88)||(2500638-2500678)
[»] chr3 (3 HSPs)
chr3 (48-88)||(35870451-35870491)
chr3 (48-88)||(48266372-48266412)
chr3 (48-88)||(52349834-52349874)
[»] chr1 (4 HSPs)
chr1 (48-88)||(13786337-13786377)
chr1 (48-88)||(22912522-22912562)
chr1 (48-88)||(25807766-25807806)
chr1 (48-88)||(23726019-23726058)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 103 - 233
Target Start/End: Complemental strand, 29455407 - 29455275
Alignment:
Q  103 catataataagtgttgtcaattattaatcaaaaattaaggaaatgannnnnnnngggttgtaaatgggagttacaaatgtcagccgca--catgtatttg 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||  ||||||||||    
T  29455407 catataataagtgttatcaattattaatcaaaaattaaggaaatgattttttttgggttgtaaatgggagttacaaatgtcagccgcatacatgtatttg 29455308  T
Q  201 taattatgtgtaactgacaatattaggagacac 233  Q
    ||  |||||||||||||||||||||||||||||    
T  29455307 tatatatgtgtaactgacaatattaggagacac 29455275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 29455548 - 29455477
Alignment:
Q  17 agcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    ||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||    
T  29455548 agcaacatatatataagcttagaaaaaaatgaagaggattaattaagaatatgaataattttaaaatgtaac 29455477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 43564338 - 43564267
Alignment:
Q  17 agcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    ||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||    
T  43564338 agcaacatatatataagcttagaaaaaaatgaaaaggattgattaagaatatgaataattttaaaatgtaac 43564267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 43564196 - 43564151
Alignment:
Q  103 catataataagtgttgtcaattattaatcaaaaattaaggaaatga 148  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  43564196 catataataagtgttgtcaattattaatcaaaaattaaggtaatga 43564151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 7574085 - 7574125
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7574085 aagaggattgattaagaatatgaataattttaaaatgtaac 7574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 41646702 - 41646742
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41646702 aagaggattgattaagaatatgaataattttaaaatgtaac 41646742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 16668680 - 16668720
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  16668680 aagaggattgatcaagaatatgaataattttaaaatgtaac 16668720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 918919 - 918989
Alignment:
Q  18 gcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  918919 gcaatatatatataagcttagaaaaaaatgaagaggattgattaagaatatgaataattttaaaatgtaac 918989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 8150485 - 8150525
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  8150485 aagaggactgattaagaatatgaataattttaaaatgtaac 8150525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 10186502 - 10186462
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  10186502 aagaggattgattaagaatatgaacaattttaaaatgtaac 10186462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 11428136 - 11428176
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  11428136 aagatgattgactaagaatatgaataattttaaaatgtaac 11428176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 919075 - 919108
Alignment:
Q  107 taataagtgttgtcaattattaatcaaaaattaa 140  Q
    |||||||||||||||||||| |||||||||||||    
T  919075 taataagtgttgtcaattatcaatcaaaaattaa 919108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 20172106 - 20172070
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatg 84  Q
    |||| |||||| |||||||||||||||||||||||||    
T  20172106 aagatgattgactaagaatatgaataattttaaaatg 20172070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 44954096 - 44954051
Alignment:
Q  304 ctaacttaagagatatgacaactcatgttcaatatcgaacaaccct 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44954096 ctaacttaagagatatgacaactcatgttcaatatcgaacaaccct 44954051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 5768058 - 5768098
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5768058 aagaggattgattaagaatatgaataattttaaaatgtaac 5768098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 25419569 - 25419609
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25419569 aagaggattgattaagaatatgaataattttaaaatgtaac 25419609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 39066864 - 39066904
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39066864 aagaggattgattaagaatatgaataattttaaaatgtaac 39066904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 47233816 - 47233856
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47233816 aagaggattgattaagaatatgaataattttaaaatgtaac 47233856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 44393816 - 44393780
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatg 84  Q
    |||| |||||| |||||||||||||||||||||||||    
T  44393816 aagatgattgactaagaatatgaataattttaaaatg 44393780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 3395 - 3355
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3395 aagaggattgattaagaatatgaataattttaaaatgtaac 3355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 13433447 - 13433487
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13433447 aagaggattgattaagaatatgaataattttaaaatgtaac 13433487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 16712103 - 16712143
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  16712103 aagatgattgattaagaatatgaataattttaaaatgtaac 16712143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 36991191 - 36991151
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36991191 aagaggattgattaagaatatgaataattttaaaatgtaac 36991151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 21605061 - 21605101
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21605061 aagaggattgattaagaatatgaataattttaaaatttaac 21605101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 37301986 - 37302022
Alignment:
Q  52 ggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||    
T  37301986 ggattgattaagaatatgaataattttaaaatgtaac 37302022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 2504995 - 2505035
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2504995 aagaggattgattaagaatatgaataattttaaaatgtaac 2505035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 46092451 - 46092411
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46092451 aagaggattgattaagaatatgaataattttaaaatgtaac 46092411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 46134976 - 46134936
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46134976 aagaggattgattaagaatatgaataattttaaaatgtaac 46134936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 53830499 - 53830539
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53830499 aagaggattgattaagaatatgaataattttaaaatgtaac 53830539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 20036431 - 20036391
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  20036431 aagaggattgattaagaatatgattaattttaaaatgtaac 20036391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 34737793 - 34737833
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  34737793 aagaggattgatcaagaatatgaataattttaaaatgtaac 34737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 5430861 - 5430821
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  5430861 aagatgattgactaagaatatgaataattttaaaatgtaac 5430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 2500638 - 2500678
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||| |||||||  |||||||||||||||||||    
T  2500638 aagaggattgatcaagaatacaaataattttaaaatgtaac 2500678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 35870491 - 35870451
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35870491 aagaggattgattaagaatatgaataattttaaaatgtaac 35870451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 48266412 - 48266372
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48266412 aagaggattgattaagaatatgaataattttaaaatgtaac 48266372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 52349874 - 52349834
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  52349874 aagaggattgattaagaatataaataattttaaaatgtaac 52349834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 13786377 - 13786337
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13786377 aagaggattgattaagaatatgaataattttaaaatgtaac 13786337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 22912522 - 22912562
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22912522 aagaggattgattaagaatatgaataattttaaaatgtaac 22912562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 25807766 - 25807806
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25807766 aagaggattgattaagaatatgaataattttaaaatgtaac 25807806  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 23726019 - 23726058
Alignment:
Q  48 aagaggattgattaagaatatgaataattttaaaatgtaac 88  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  23726019 aagaggattgattaagaatatgaataa-tttaaaatgtaac 23726058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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