View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_high_2 (Length: 781)
Name: NF20409_high_2
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 18 - 739
Target Start/End: Complemental strand, 52920074 - 52919360
Alignment:
| Q |
18 |
actaaaagctgttcttataatggcatctactgataagtgannnnnnnnnnnnnnnngcacttctccagaatatggatggtgcagtagaatcaacagcttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52920074 |
actaaaagctgttcttataatggcatctactgataagtgattttttttt-------gcacttctccagaatatggatggtgcagtagaatcaacagcttc |
52919982 |
T |
|
| Q |
118 |
aaaagaacaaggaattaaccctttatataaaaccatggagtctttgaatgctttgagagatattattgtaaagggtcttgaaagtggcctcaggaatgat |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919981 |
aaaagaacaaggaattaaccctttatttaaaaccatggagtctttgaatgctttgagagatattattgtaaagggtcttgaaagtggcctcaggaatgat |
52919882 |
T |
|
| Q |
218 |
gctccaaattctgcaatagctatgcgccaaaaggtgagattaattttattaaagctcgagtatggatagtaatttaaagaatgttggaacatcttttcat |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919881 |
gctccagattctgcaatagctatgcgccaaaaggtgagattaattttattaaagctcgagtatggatagtaatttaaagaatgttggaacatcttttcat |
52919782 |
T |
|
| Q |
318 |
ttttgtttctttggaggaacagtggcgcctctgtgagattgggcttgaggactactcatttgttcttttgagcaggttcttggcataccttttcctaatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52919781 |
ttttgtttctttggaggaacagtggcgcctctgtgagattgggcttgaggactactcatttgttcttttgagcaggttcttggcataccttttcctgata |
52919682 |
T |
|
| Q |
418 |
tacactgtgaacaatcatcagatatttggattttgaacaacttttgtagaatatatgaatggcacaattttgcaataggtagagttcttgctagccactt |
517 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919681 |
tacactttgaacaatcatcagatatttggattttgaacaacttttgtagaatatatgaatggcacaattttgcaataggtagagttcttgctagccactt |
52919582 |
T |
|
| Q |
518 |
agatgataaggtacaactagaatataatgcatatttgctctaaatgtacgaaaatagatgtttattagatgttggacttgtttaaagaattatatcaatt |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919581 |
agatgataaggtacaactagaatataatgcatatttgctctaattgtacgaaaatagatgtttattagatgttggacttgtttaaagaattatatcaatt |
52919482 |
T |
|
| Q |
618 |
atctaattcattagaaaggaatactaaatgataaaatttgtcaaatttaaacaattattaattataaggatgtattgaagacaggcttgctagatgtcaa |
717 |
Q |
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|||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52919481 |
atctaattcattagaagggcatactatatgataaaatttgtcaaatttaaacaattattaattataaggatgtattgaagacaggctggctagatgtcaa |
52919382 |
T |
|
| Q |
718 |
atagaaaaatgtagttggattg |
739 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
52919381 |
atagaaaaatgtagttggattg |
52919360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 74 - 739
Target Start/End: Complemental strand, 35231757 - 35231093
Alignment:
| Q |
74 |
gcacttctccagaatatggatggtgcagtagaatcaacagcttcaaaagaacaaggaattaaccctttatataaaaccatggagtctttgaatgctttga |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
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| T |
35231757 |
gcacttctccagaatatggatggtgcagtagaatcaacagcttcaaaagaacaaggaattaaacttttatttaaaaccatggagtctttgaatgctttga |
35231658 |
T |
|
| Q |
174 |
gagatattattgtaaagggtcttgaaagtggcctcaggaatgatgctccaaattctgcaatagctatgcgccaaaaggtgagattaattttattaaagct |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35231657 |
gagatattattgtaaagggtcttgaaagtggcctcaggaatgatgctccagattctgcaatagctatgcgccaaaaggtgagattaattttattaaagct |
35231558 |
T |
|
| Q |
274 |
cgagtatggatagtaatttaaagaatgttggaacatcttttcatttttgtttctttggaggaacagtggcgcctctgtgagattgggcttgaggactact |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35231557 |
tgagtatggatagtaatttaaagaatgttggaacatcttttcatttttgtttctttggaggaacagtggcgcctctgtgagattgggcttgaggactact |
35231458 |
T |
|
| Q |
374 |
catttgttcttttgagcaggttcttggcataccttttcctaatttacactgtgaacaatcatcagatatttggattttgaacaacttttgtagaatatat |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35231457 |
catttgttcttttgagcaggttcttggcataccttttcctaatttacactttgaacaatcatcagatatttggattttgaacaacttttctagaatatat |
35231358 |
T |
|
| Q |
474 |
gaatggcacaattttgcaataggtagagttcttgctagccacttagatgataaggtacaactagaatataatgcatatttgctctaaatgtacgaaaata |
573 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35231357 |
gaatggcacaattttgcaataggtagagttcttgctagccacttagatgataaggtacaactagaatataatgcatatttgctctaattgtacgaaaata |
35231258 |
T |
|
| Q |
574 |
gatgtttattagatgttggacttgtttaaagaattatatcaattatctaattcattagaaaggaatactaaatgataaaatttgtcaaatttaaacaatt |
673 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||| |
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| T |
35231257 |
gatgtttaatagatgttggacttgtttaaagaattatatcaattatctaattcattagaagggcatactatatgataaaatttgtcaaatttaaagaatt |
35231158 |
T |
|
| Q |
674 |
attaattataaggatgtattgaagacaggcttgctagatgtcaaatagaaaaatgtagttggattg |
739 |
Q |
| |
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||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
35231157 |
gttaattataaggatggattgaagacaggctgcctagatgtc-acgagaaaaatgtagttggattg |
35231093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 35231812 - 35231775
Alignment:
| Q |
20 |
taaaagctgttcttataatggcatctactgataagtga |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35231812 |
taaaagctgttcttataatggcatctactgataagtga |
35231775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 740 - 769
Target Start/End: Complemental strand, 38168422 - 38168393
Alignment:
| Q |
740 |
tgtcatactccaaattttgaccacttttct |
769 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38168422 |
tgtcatactccaaattttgaccacttttct |
38168393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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