View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_high_20 (Length: 276)
Name: NF20409_high_20
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 9082519 - 9082282
Alignment:
| Q |
17 |
aatatgcatatcgggtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgtttctgnnnnnnnng |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9082519 |
aatatgcatatcgcgtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgtttct-----tttag |
9082425 |
T |
|
| Q |
117 |
gattcagctactatatatgatgaagaaaaattccattaatttaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9082424 |
gattcagctactatatatgatgaagaaaaattccattaatttaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgt |
9082325 |
T |
|
| Q |
217 |
tgctaatagtgttcattcaaattatttatagcacaatttattt |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9082324 |
tgctaatagtgttcattcaaattatttatagcacaatttattt |
9082282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 32664653 - 32664891
Alignment:
| Q |
17 |
aatatgcatatcgggtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgtttctgnnnnnnnng |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
32664653 |
aatatgcatatcgcgtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtaattttttaagtttctgtttct-----tttag |
32664747 |
T |
|
| Q |
117 |
gattcagctactatatatgatgaagaaaaattccattaatttaa-ctctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32664748 |
gattcagctactatatatgatgaagaaaaattccattaatttaaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatg |
32664847 |
T |
|
| Q |
216 |
ttgctaatagtgttcattcaaattatttatagcacaatttattt |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32664848 |
ttgctaatagtgttcattcaaattatttatagcataatttattt |
32664891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 6413718 - 6413481
Alignment:
| Q |
17 |
aatatgcatatcgggtgcatcaatcacttccaaatataagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgtttctgnnnnnnnng |
116 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |
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| T |
6413718 |
aatatgaatatcgcgtgcatcaatcacttccaaatataagtctcatttgtagtgcaacttgatgctgtactttttaaagtttctgtttct-----tttag |
6413624 |
T |
|
| Q |
117 |
gattcagctactatatatgatgaagaaaaattccattaatttaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgt |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413623 |
gattcagctactatatatgatgaagaaaaattccattaatttaactctctaccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgt |
6413524 |
T |
|
| Q |
217 |
tgctaatagtgttcattcaaattatttatagcacaatttattt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6413523 |
tgctaatagtgttcattcaaattatttatagcacaatttattt |
6413481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 26292382 - 26292248
Alignment:
| Q |
132 |
tatgatgaagaaaaattccattaatttaactctcta-------ccatttcaaaggaatgagtaagtttggtacaattttaaaacccatatgttgctaata |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
26292382 |
tatgatgaagaaaaattccattaatttaactctctagtctctaccatgtcaaaggaatgagcaagtttggtacaattttaaaacccatatgttgctgata |
26292283 |
T |
|
| Q |
225 |
gtgttcattcaaattatttatagcacaatttattt |
259 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||| |
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| T |
26292282 |
gtgttcattcagattgtttatagcacaatttattt |
26292248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 26292562 - 26292511
Alignment:
| Q |
53 |
taagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgttt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26292562 |
taagtctcatttgtattgcaacttgatgctgtacttttttaagtttctgttt |
26292511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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