View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20409_high_21 (Length: 250)
Name: NF20409_high_21
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52113106 - 52113328
Alignment:
| Q |
1 |
tcccactactataagagtacaatttaacacagaattaatgattaatcgttgtgaattaccttgtcatctgtatgcccccaccaaaactatggtttagtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52113106 |
tcccactactataagagtacaatttaacacagaattaatgattaatcgttgtgaattaccttgtcatctgtatgcccccaccaaaactaaggtttagtat |
52113205 |
T |
|
| Q |
101 |
tgattcatgttaagtaaattctgacaaggaattgtttcacgagaaatatcgtgaactattcgtcctagctagggcccaattaattacttggttgattcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52113206 |
tgattcatgttaagtaaattctgacaaggaattgtttcacgagaaatatcgtgaactattcgtcctagctagggcccaattaattacttggttgattcat |
52113305 |
T |
|
| Q |
201 |
gttctatatttatcttgtatgta |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
52113306 |
gttctatatttatcttgtatgta |
52113328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University