View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_high_22 (Length: 250)
Name: NF20409_high_22
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_high_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 49871068 - 49870819
Alignment:
| Q |
1 |
ttaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaagctcgtcgttagaaaaccaatggcaactcaacaatgcatggt |
100 |
Q |
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| T |
49871068 |
ttaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaactcatcgttagaaaaccaatggcaactcaacaatgcatggt |
49870969 |
T |
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| Q |
101 |
gacagcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgccatttcaccggggaacccgaagtacttaccatgcaccccaag |
200 |
Q |
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| T |
49870968 |
gacagcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgccatttcaccggggaacccgaagttcttaccatgcaacccaag |
49870869 |
T |
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| Q |
201 |
atagcttattggggaagaccatggagaaacttctccaaggttgttatcgt |
250 |
Q |
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| T |
49870868 |
atagcttatttgggaagaccatggagaaacttctccaaggttgttatcgt |
49870819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 49865127 - 49864882
Alignment:
| Q |
5 |
cggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaagctcgtcgttagaaaaccaatggcaactcaacaatgcatggtgaca |
104 |
Q |
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| T |
49865127 |
cggaacaattgactttgtctttggtgatgctgttggagttttccaaaactgcaagctcgtcgttagaaaaccaatggcaaatcaacaatgcatggtgaca |
49865028 |
T |
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| Q |
105 |
gcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgccatttcaccggggaacccgaagtacttaccatgcaccccaagatag |
204 |
Q |
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| T |
49865027 |
gcaggaggaagaaccaaagttgacagtgtatccgcccttgttttccaaaactgtcatttcaccggggaacccgaagttcttaccatgcaacccaagatag |
49864928 |
T |
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| Q |
205 |
cttattggggaagaccatggagaaacttctccaaggttgttatcgt |
250 |
Q |
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| T |
49864927 |
cttatttgggaagaccatggagaaatttctccaaggttgttatcgt |
49864882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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