View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_high_30 (Length: 212)
Name: NF20409_high_30
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 3585397 - 3585592
Alignment:
| Q |
1 |
cagagaatggacccaagtacgtgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattcttcc |
100 |
Q |
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| T |
3585397 |
cagagaatggacccaagtacttgacacggtctggaccgtaccactggcttccagaaggagcagtcttcttggtggttgttttcctcatggtgattcttcc |
3585496 |
T |
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| Q |
101 |
catcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
196 |
Q |
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| T |
3585497 |
catcacaaggtctggagtcgaaggggaaagcttgattgcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
3585592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 3575821 - 3575626
Alignment:
| Q |
1 |
cagagaatggacccaagtacgtgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattcttcc |
100 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| | |||||||| ||||||||||||||||| |||||||||| |
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| T |
3575821 |
cagagaatggacccaagtatttgacacgatctggaccgtaccacgggcttccagaagggacgttcttcttgttggttgttttcctcatggtgattcttcc |
3575722 |
T |
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| Q |
101 |
catcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
196 |
Q |
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| T |
3575721 |
catcacaaggtctggagtggaaggggaaagcttgattgccttcccaaccattgttgaagaagagagagccattgttgatgtagccattctagtatt |
3575626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 3572537 - 3572346
Alignment:
| Q |
1 |
cagagaatggacccaagtacgtgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattcttcc |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| | |||||||| |
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| T |
3572537 |
cagagaatggacccaagtacttgacacggtctggaccgtaccatgggcttccagaaggaacattcttcttggtggttgttttcctcatggtaattcttcc |
3572438 |
T |
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| Q |
101 |
catcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtag |
192 |
Q |
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| T |
3572437 |
catgacaaggtctggagtagagggggaaagcttgattgccttcccaaccaatgatgaagaagagagagacattgttgaagcagccatggtag |
3572346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 3569488 - 3569295
Alignment:
| Q |
3 |
gagaatggacccaagtacgtgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattcttccca |
102 |
Q |
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|||||||| ||||||||| | |||||||||||||||||||| ||||||||| | | || |||||||||||||||||||||||| ||| |||||||| |
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| T |
3569488 |
gagaatgggcccaagtacttcacacggtctggaccgtaccatgggcttccagacggaacggacttcttggtggttgttttcctcattgtgactcttccca |
3569389 |
T |
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| Q |
103 |
tcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
196 |
Q |
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| ||| |||| ||||||| |||||||| |||||| |||| || || | ||||||||| ||||| | ||||||||||||||||||||| ||||| |
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| T |
3569388 |
ccccaatgtcttgagtggatggggaaagtttgattgccttcccgacaaatgatgaagaagagagggacattgttgaagcagccattgtggtatt |
3569295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 3563840 - 3563647
Alignment:
| Q |
3 |
gagaatggacccaagtacgtgacacggtctggaccgtaccactagcttccagaagaagaggtcttcttggtggttgttttcctcatgatgattcttccca |
102 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||| |||||||||| | | |||||||||||||| ||||||||| ||| |||||||| |
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| T |
3563840 |
gagaatgggcccaagtacttgacacggtctggaccgtaccaaggacttccagaaggaacagacttcttggtggttgctttcctcattgtgactcttccca |
3563741 |
T |
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| Q |
103 |
tcacaaggtctggagtggaaggggaaagcttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtagtatt |
196 |
Q |
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| T |
3563740 |
ccccaatgtcttgggtggatggggaaagcttgattgccttccctacaaatgatgaagaagagagagacattgttgaagccgccattttagtatt |
3563647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 13275643 - 13275583
Alignment:
| Q |
132 |
ttgatttcctttccaaccattgatgaagatgagagagccattgttgaagcagccattgtag |
192 |
Q |
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| T |
13275643 |
ttgattgcctttccaaccaatgatgaagaagagagagacattgttgaggcagccattgtag |
13275583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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