View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_10 (Length: 395)
Name: NF20409_low_10
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 30415627 - 30415993
Alignment:
| Q |
11 |
agcataggtagcacaatgtacacatataatgacacccaaacataaaaagtccacttccaatttcgaattaactctttagcccaaggtaaatgggagttta |
110 |
Q |
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| T |
30415627 |
agcataagtagcacgatgtacacatataatgacacccaaacatagaaagtccacttccaatttcgaattaactctttagcccaaggtaaatgggagttta |
30415726 |
T |
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| Q |
111 |
taacaatttcagcttcatatagttgtggaagagatgaagttcctgctcttggatgcagggttactcttatagcatttgttctttgattttgttccttgtg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30415727 |
taacaatttcagcttcatatagttgtggaagagatgaagttcctgctcttggatgcagggttactcttatagcatttgttctttgattttgttccttgtg |
30415826 |
T |
|
| Q |
211 |
cctcaatatttctacattgattttctgagtctcggctgagattcctagcaccaatggcacacccatcataactgtccttgcaagtcgaatcggtgagctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30415827 |
cctcaatatttctacattgattttctgagtctcggctgagattcctagcaccaatggcacacccatcataactgtccttgcaagtcgaatcggtgagctt |
30415926 |
T |
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| Q |
311 |
cgaaaccttaacatgcatggttggcttgattttgctatcacgtttccatttactgataggagctctg |
377 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30415927 |
cgaaaccttaacatgcatgggtggcttgattttgctatcacgtttccatttactgataggagctctg |
30415993 |
T |
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