View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_12 (Length: 391)
Name: NF20409_low_12
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 2 - 375
Target Start/End: Complemental strand, 46640495 - 46640122
Alignment:
| Q |
2 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
101 |
Q |
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| T |
46640495 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
46640396 |
T |
|
| Q |
102 |
tgtggaaaagagctaagtctattaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgta |
201 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640395 |
tgtggaaaagagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgta |
46640296 |
T |
|
| Q |
202 |
aggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtt |
301 |
Q |
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| T |
46640295 |
aggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtt |
46640196 |
T |
|
| Q |
302 |
tgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgtgatga |
375 |
Q |
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| T |
46640195 |
tgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgtgatga |
46640122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 2 - 375
Target Start/End: Complemental strand, 46642787 - 46642414
Alignment:
| Q |
2 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642787 |
aatgttcctgagaattggttgttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagttta |
46642688 |
T |
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| Q |
102 |
tgtggaaaagagctaagtctattaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgta |
201 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642687 |
tgtggaaaagagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgta |
46642588 |
T |
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| Q |
202 |
aggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtt |
301 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46642587 |
aggatcatctagtgacggtgcacaaatgatacctgtgtagttgcatacatttgggccataccagtttaaagtggtgttttttgggtctgaggtgaatgtt |
46642488 |
T |
|
| Q |
302 |
tgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgtgatga |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46642487 |
tgtttccatgcttggagtgctatgtaggctttggtgagtcttggatttagtggtggtagagattggtgtgatga |
46642414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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