View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20409_low_16 (Length: 360)
Name: NF20409_low_16
Description: NF20409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20409_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 46642363 - 46642016
Alignment:
| Q |
1 |
tataagaggattccattactgataatggatgggtttgattttgtgttatgggaatgcgaatttatataaatgtgtgtatgttggagaaatattggaagtt |
100 |
Q |
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| T |
46642363 |
tataagaggattccattaccgataatggatgggtttgattttgtgttatgggaatgtgaatttatataaatgtgtgtatgttggagaaatattggaagtt |
46642264 |
T |
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| Q |
101 |
agtgtttgttgtgctgcaaattgacattactcttataaaataataatgtaattggtttggttagacatttaaatggtgtgacatataggttatccataaa |
200 |
Q |
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| T |
46642263 |
agtgtttgttgtgctgcaaattgacgttactcttataaaataataatgtaattggtttggttagacgtttaaatggtgtgacatctaggttacctataaa |
46642164 |
T |
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| Q |
201 |
agaatggtaggtaattaatcttaacaaatgaaaatattcacatttttaggtggtatccttcatggatttcgtgcatgtggatttcctccggtggaaatct |
300 |
Q |
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| T |
46642163 |
agaatagtaggtaatttatactaacgaat--aaatattcacatttttaagtggtatccttcatggatttcgtgcatgtggatttccttcggtggaaatct |
46642066 |
T |
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| Q |
301 |
ctcccatcttctgcagtgacataatttgcaccattaattttcttctctct |
350 |
Q |
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| T |
46642065 |
ctccaatcctctgcagtgacataatttacaccattaattatcttctctct |
46642016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 46640071 - 46639893
Alignment:
| Q |
1 |
tataagaggattccattactgataatggatgggtttgattttgtgttatgggaatgcgaatttatataaa---tgtgtgtatgttggagaaatattggaa |
97 |
Q |
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| T |
46640071 |
tataagaggattccattactgataatggatgggtttgattttgtgttatgggaatgtgaatttatataaggggtgtgtgtatgttggagaaattttggaa |
46639972 |
T |
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| Q |
98 |
gttagtgtttgttgtgctgcaaattgacattactcttataaaataataat---gtaattggtttggttagacatttaaa |
173 |
Q |
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| T |
46639971 |
gtttctgtttgttgtgctgcaaattgacattactcttataaaataataatagagtgattggtttggttagacatttaaa |
46639893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 29966171 - 29966101
Alignment:
| Q |
278 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctct |
348 |
Q |
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| T |
29966171 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctct |
29966101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 30008627 - 30008697
Alignment:
| Q |
278 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctct |
348 |
Q |
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| T |
30008627 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctct |
30008697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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